Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   QMY17_RS19775 Genome accession   NZ_CP125812
Coordinates   3678977..3679411 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain N3378-3At     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3673977..3684411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS19760 poxB 3674376..3676100 (-) 1725 WP_014478872.1 pyruvate oxidase -
  QMY17_RS19765 mutT 3676167..3676616 (-) 450 WP_014478871.1 8-oxo-dGTP diphosphatase MutT -
  QMY17_RS19770 topB 3676729..3678912 (-) 2184 WP_014478870.1 DNA topoisomerase III -
  QMY17_RS19775 lrpC 3678977..3679411 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  QMY17_RS19780 ydzA 3679596..3679886 (+) 291 WP_014478869.1 DUF3817 domain-containing protein -
  QMY17_RS19785 amj 3679931..3680740 (-) 810 WP_014478868.1 lipid II flippase Amj -
  QMY17_RS19790 ydaG 3681246..3681668 (-) 423 WP_014478867.1 pyridoxamine 5'-phosphate oxidase family protein -
  QMY17_RS19795 ydaF 3681746..3682297 (-) 552 WP_014478866.1 GNAT family N-acetyltransferase -
  QMY17_RS19800 lyxE 3682385..3682888 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  QMY17_RS19805 ydaD 3682904..3683764 (-) 861 WP_014478865.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=764204 QMY17_RS19775 WP_003246585.1 3678977..3679411(-) (lrpC) [Bacillus subtilis strain N3378-3At]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=764204 QMY17_RS19775 WP_003246585.1 3678977..3679411(-) (lrpC) [Bacillus subtilis strain N3378-3At]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1