Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   QMY17_RS16560 Genome accession   NZ_CP125812
Coordinates   3074749..3075492 (-) Length   247 a.a.
NCBI ID   WP_003233230.1    Uniprot ID   G4NRP4
Organism   Bacillus subtilis strain N3378-3At     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3069749..3080492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS16540 - 3070129..3071520 (+) 1392 WP_014479342.1 hypothetical protein -
  QMY17_RS16545 sndC 3071593..3072783 (+) 1191 WP_014479341.1 N-acetyl amino acid acetylase SndC -
  QMY17_RS16550 ecsC 3072800..3073510 (-) 711 WP_014479340.1 EcsC family protein -
  QMY17_RS16555 ecsB 3073530..3074756 (-) 1227 WP_014479339.1 ABC transporter permease EcsB -
  QMY17_RS16560 pptA 3074749..3075492 (-) 744 WP_003233230.1 ABC transporter ATP-binding protein EcsA Regulator
  QMY17_RS16565 hinT 3075980..3076417 (+) 438 WP_003233231.1 HIT family protein -
  QMY17_RS16570 serC 3076564..3077643 (+) 1080 WP_014479338.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  QMY17_RS16575 trpP 3077768..3078286 (+) 519 WP_003233236.1 tryptophan transporter TrpP -
  QMY17_RS16580 - 3078359..3078550 (-) 192 WP_003233238.1 hypothetical protein -
  QMY17_RS16585 yhaH 3078680..3079036 (+) 357 WP_003245875.1 YtxH domain-containing protein -
  QMY17_RS16590 scoC 3079214..3079825 (+) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -
  QMY17_RS16595 yhaI 3079822..3080163 (-) 342 WP_033881416.1 YhaI family protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27722.20 Da        Isoelectric Point: 5.9114

>NTDB_id=764192 QMY17_RS16560 WP_003233230.1 3074749..3075492(-) (pptA) [Bacillus subtilis strain N3378-3At]
MSLLSVKDLTGGYTRNPVLKNVSFTLEPNQIVGLIGLNGAGKSTTIRHIIGLMDPHKGSIELNGKTFAEDPEGYRSQFTY
IPETPVLYEELTLMEHLELTAMAYGLSKETMEKRLPPLLKEFRMEKRLKWFPAHFSKGMKQKVMIMCAFLAEPALYIIDE
PFLGLDPLAINALLERMNEAKKGGASVLMSTHILATAERYCDSFIILHNGEVRARGTLSELREQFGMKDAALDDLYLELT
KEDAGHE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=764192 QMY17_RS16560 WP_003233230.1 3074749..3075492(-) (pptA) [Bacillus subtilis strain N3378-3At]
ATGTCTCTGCTATCGGTAAAAGACTTGACCGGCGGATATACAAGGAATCCGGTTTTAAAAAACGTATCATTCACCCTTGA
ACCGAATCAAATTGTCGGATTAATCGGGCTGAATGGTGCTGGTAAAAGTACAACAATCAGACACATCATCGGGCTGATGG
ACCCGCATAAAGGTTCAATCGAATTAAACGGTAAAACGTTTGCTGAGGATCCGGAAGGCTACCGTTCACAATTTACCTAT
ATACCTGAAACACCTGTTTTATACGAAGAATTGACGCTGATGGAGCATCTTGAACTAACAGCCATGGCATATGGACTGTC
AAAAGAAACGATGGAGAAAAGGCTGCCTCCGCTACTAAAGGAATTCCGAATGGAAAAGAGGCTGAAGTGGTTCCCGGCCC
ATTTTTCTAAAGGAATGAAGCAGAAGGTTATGATTATGTGCGCATTTTTGGCAGAGCCTGCGCTCTACATTATTGATGAG
CCTTTTCTAGGGCTTGATCCGCTTGCCATTAACGCGCTGCTTGAACGGATGAATGAAGCGAAAAAAGGCGGGGCGAGCGT
GCTGATGTCAACACACATTTTGGCAACGGCAGAACGCTATTGTGATTCGTTTATTATTTTACATAACGGCGAGGTGCGGG
CGCGCGGCACGCTGTCAGAGCTCAGAGAGCAGTTTGGAATGAAGGACGCGGCGCTGGACGATTTGTATCTTGAGCTTACA
AAGGAAGACGCTGGCCATGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NRP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

56.904

96.761

0.551
  pptA Streptococcus thermophilus LMD-9

56.485

96.761

0.547