Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   LDO79_RS10050 Genome accession   NZ_AP024984
Coordinates   1845717..1846526 (-) Length   269 a.a.
NCBI ID   WP_011229053.1    Uniprot ID   Q5SGW1
Organism   Thermus thermophilus strain JCM10941     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1840717..1851526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO79_RS10020 (JCM10941_19460) rsmI 1840878..1841672 (-) 795 WP_011229050.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LDO79_RS10025 (JCM10941_19470) - 1841674..1842168 (-) 495 WP_011229051.1 hypothetical protein -
  LDO79_RS10030 (JCM10941_19480) - 1842232..1842759 (-) 528 WP_011173971.1 inorganic diphosphatase -
  LDO79_RS10035 (JCM10941_19490) - 1842792..1843418 (+) 627 WP_011173972.1 YcxB family protein -
  LDO79_RS10040 (JCM10941_19500) comEA 1843391..1843699 (+) 309 WP_024119555.1 helix-hairpin-helix domain-containing protein Machinery gene
  LDO79_RS10045 (JCM10941_19510) comA/comEC 1843696..1845729 (+) 2034 WP_011229052.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  LDO79_RS10050 (JCM10941_19520) spo0J 1845717..1846526 (-) 810 WP_011229053.1 ParB/RepB/Spo0J family partition protein Regulator
  LDO79_RS10055 (JCM10941_19530) soj 1846510..1847259 (-) 750 WP_011229054.1 chromosome-partitioning ATPase Soj -
  LDO79_RS10060 (JCM10941_19540) rsmG 1847253..1848002 (-) 750 WP_143591821.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29760.65 Da        Isoelectric Point: 10.1293

>NTDB_id=76418 LDO79_RS10050 WP_011229053.1 1845717..1846526(-) (spo0J) [Thermus thermophilus strain JCM10941]
MSRKPSGLGRGLEALLPKTGAGVVRLPLASIRPNPRQPRKRFAEESLKELADSIREKGLLQPLLVRPQGDGYELVAGERR
YRAALMAGLQEVPAVVKDLTDREALELALVENLQREDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALRLLQL
PPEALEALERGEITAGHARALLMLEPEDRLWGLKEILEKGLSVRQAEALRERLAMAPKRPAEPSPLSLELSRHLGLPVRV
VGGKKGKVVIQYRSLEELEALLRRLGYQA

Nucleotide


Download         Length: 810 bp        

>NTDB_id=76418 LDO79_RS10050 WP_011229053.1 1845717..1846526(-) (spo0J) [Thermus thermophilus strain JCM10941]
GTGTCCAGGAAGCCTAGCGGTCTCGGGCGGGGCCTCGAGGCCCTGCTCCCCAAGACGGGGGCGGGGGTGGTCCGCCTGCC
CCTCGCCAGCATCCGCCCCAACCCCCGCCAGCCGCGGAAGCGGTTCGCCGAGGAGAGCCTCAAGGAGCTCGCCGACTCCA
TCCGGGAGAAGGGCCTCCTCCAACCCCTCCTCGTCCGGCCCCAGGGGGACGGGTACGAGCTCGTGGCGGGGGAAAGGCGC
TACCGGGCCGCCCTCATGGCGGGGCTTCAGGAGGTCCCCGCCGTGGTCAAGGACCTCACGGACCGGGAGGCCTTGGAGCT
CGCCCTGGTGGAGAACCTCCAGCGGGAGGACCTCTCCCCTGTGGAGGAGGCCCGGGGCTACCAGGCCCTTTTGGAGATGG
GCCTCACCCAGGAGGAGGTGGCCCGGCGGGTGGGCAAGGCCCGCTCCACCGTGGCCAACGCCCTCAGGCTCCTCCAGCTT
CCCCCCGAGGCCCTCGAGGCCCTGGAGCGGGGGGAGATCACCGCGGGCCACGCCCGGGCCCTCCTCATGCTGGAGCCCGA
GGACCGGCTCTGGGGGCTTAAGGAGATCCTGGAGAAGGGGCTTTCCGTGCGGCAGGCGGAGGCCCTGAGGGAGCGCCTGG
CCATGGCCCCTAAGCGCCCCGCTGAGCCCTCCCCCCTCTCCCTGGAGCTCTCCCGCCACCTGGGCCTGCCCGTGAGGGTG
GTGGGGGGGAAGAAGGGCAAGGTGGTGATCCAGTACCGCTCCTTGGAGGAGCTGGAGGCCCTTCTGCGGCGCCTCGGCTA
CCAGGCGTAG

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(162-210)

ParB/Sulfiredoxin domain (ParB_N)

(26-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5SGW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

41.6

92.937

0.387