Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   QMY17_RS14240 Genome accession   NZ_CP125812
Coordinates   2652514..2653089 (-) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   O34857
Organism   Bacillus subtilis strain N3378-3At     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2647514..2658089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS14220 moeB 2648412..2649431 (-) 1020 WP_014479671.1 molybdopterin-synthase adenylyltransferase MoeB -
  QMY17_RS14225 mobA 2649482..2650081 (-) 600 WP_014479670.1 molybdenum cofactor guanylyltransferase -
  QMY17_RS14230 cse15 2650218..2651183 (+) 966 WP_014479669.1 spore protein Cse15 -
  QMY17_RS14235 - 2651296..2652446 (+) 1151 WP_087614160.1 IS3 family transposase -
  QMY17_RS14240 rok 2652514..2653089 (-) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  QMY17_RS14245 ykuV 2653555..2654001 (-) 447 WP_014479665.1 thiol-disulfide oxidoreductase YkuV -
  QMY17_RS14250 ahpA 2654071..2654613 (-) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  QMY17_RS14255 mscT 2654850..2655653 (+) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  QMY17_RS14260 ykuS 2655690..2655935 (-) 246 WP_003232382.1 YkuS family protein -
  QMY17_RS14265 dapI 2655997..2657121 (-) 1125 WP_014476668.1 N-acetyldiaminopimelate deacetylase -
  QMY17_RS14270 dapD 2657191..2657901 (-) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=764167 QMY17_RS14240 WP_003232378.1 2652514..2653089(-) (rok) [Bacillus subtilis strain N3378-3At]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=764167 QMY17_RS14240 WP_003232378.1 2652514..2653089(-) (rok) [Bacillus subtilis strain N3378-3At]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5ZUX
  PDB 5ZUZ

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1