Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   QMY17_RS13845 Genome accession   NZ_CP125812
Coordinates   2575300..2575749 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain N3378-3At     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2570300..2580749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS13815 sepM 2570379..2571404 (-) 1026 WP_003245451.1 protease DdcP Regulator
  QMY17_RS13820 ylbK 2571406..2572188 (-) 783 WP_003232221.1 patatin family protein -
  QMY17_RS13825 spoVV 2572369..2573595 (+) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  QMY17_RS13830 coaD 2573606..2574091 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  QMY17_RS13835 rsmD 2574096..2574650 (-) 555 WP_033881642.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  QMY17_RS13840 ylbG 2574973..2575245 (-) 273 WP_009967171.1 YlbG family protein -
  QMY17_RS13845 ylbF 2575300..2575749 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  QMY17_RS13850 ylbE 2575865..2576104 (-) 240 WP_003232231.1 YlbE-like family protein -
  QMY17_RS13855 ylbD 2576120..2576518 (-) 399 WP_003232233.1 YlbD family protein -
  QMY17_RS13860 ylbC 2576750..2577790 (-) 1041 WP_014479713.1 CAP domain-containing protein -
  QMY17_RS13865 ylbB 2577874..2578320 (-) 447 WP_003221362.1 CBS domain-containing protein -
  QMY17_RS13870 ylbA 2578460..2578822 (+) 363 WP_014479712.1 YugN family protein -
  QMY17_RS13875 ctaG 2578854..2579747 (-) 894 WP_014479711.1 cytochrome c oxidase assembly factor CtaG -
  QMY17_RS13880 ctaF 2579775..2580107 (-) 333 WP_014479710.1 cytochrome c oxidase subunit IVB -
  QMY17_RS13885 ctaE 2580110..2580733 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=764165 QMY17_RS13845 WP_003221370.1 2575300..2575749(-) (ylbF) [Bacillus subtilis strain N3378-3At]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=764165 QMY17_RS13845 WP_003221370.1 2575300..2575749(-) (ylbF) [Bacillus subtilis strain N3378-3At]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1