Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   QMY17_RS12830 Genome accession   NZ_CP125812
Coordinates   2369390..2369821 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain N3378-3At     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2364390..2374821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS12820 hexA 2365874..2368450 (-) 2577 WP_014479821.1 DNA mismatch repair protein MutS Machinery gene
  QMY17_RS12825 cotE 2368583..2369128 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  QMY17_RS12830 ymcA 2369390..2369821 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  QMY17_RS12835 miaB 2369823..2371352 (-) 1530 WP_014479820.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  QMY17_RS12840 kbl 2371500..2372678 (-) 1179 WP_014479819.1 glycine C-acetyltransferase -
  QMY17_RS12845 tdh 2372691..2373734 (-) 1044 WP_014479818.1 L-threonine 3-dehydrogenase -
  QMY17_RS12850 spoVS 2373999..2374259 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=764153 QMY17_RS12830 WP_003231834.1 2369390..2369821(-) (ymcA) [Bacillus subtilis strain N3378-3At]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=764153 QMY17_RS12830 WP_003231834.1 2369390..2369821(-) (ymcA) [Bacillus subtilis strain N3378-3At]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1