Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   QMY17_RS11415 Genome accession   NZ_CP125812
Coordinates   2121043..2122818 (+) Length   591 a.a.
NCBI ID   WP_014480018.1    Uniprot ID   -
Organism   Bacillus subtilis strain N3378-3At     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2116043..2127818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS11365 yozC 2116467..2116670 (+) 204 WP_003231245.1 DUF6501 family protein -
  QMY17_RS11370 yozO 2117026..2117370 (+) 345 WP_003220141.1 PH domain-containing protein -
  QMY17_RS11375 - 2117464..2117697 (-) 234 WP_003231251.1 hypothetical protein -
  QMY17_RS11380 - 2117702..2117965 (-) 264 WP_004399338.1 hypothetical protein -
  QMY17_RS11385 yocM 2118032..2118508 (+) 477 WP_014477071.1 salt stress-responsive protein YocM -
  QMY17_RS11390 - 2118495..2118722 (-) 228 WP_014480021.1 hypothetical protein -
  QMY17_RS11395 - 2118800..2119132 (+) 333 WP_014480020.1 hypothetical protein -
  QMY17_RS11400 stpP 2119207..2119698 (+) 492 WP_014477068.1 TraR/DksA family transcriptional regulator -
  QMY17_RS11405 azoJ 2119851..2120477 (+) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  QMY17_RS11415 recQ 2121043..2122818 (+) 1776 WP_014480018.1 DNA helicase RecQ Machinery gene
  QMY17_RS11420 walN 2123066..2123929 (+) 864 WP_014480017.1 LysM peptidoglycan-binding and 3D domain-containing protein -
  QMY17_RS11425 desR 2124537..2125136 (-) 600 WP_004399356.1 two-component system response regulator DesR -
  QMY17_RS11430 desK 2125155..2126267 (-) 1113 WP_014480016.1 two-component sensor histidine kinase DesK -
  QMY17_RS11435 desE 2126387..2127445 (-) 1059 WP_004399588.1 fatty acid desaturase DesE -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67373.82 Da        Isoelectric Point: 6.2902

>NTDB_id=764147 QMY17_RS11415 WP_014480018.1 2121043..2122818(+) (recQ) [Bacillus subtilis strain N3378-3At]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGMADDERKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPNACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAADQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=764147 QMY17_RS11415 WP_014480018.1 2121043..2122818(+) (recQ) [Bacillus subtilis strain N3378-3At]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAAATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATATCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
GGCTTATAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCACAGAGTTTATCCGGATTTTGCAGGGCATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCTGTTATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACAGGATTTTCACGAGAGAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACAGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAATCAAGTCAGGGCAGGCCGGTATCATGGAGGTATGGCTGATGA
TGAGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATCAGATTTGTTCTGCATGCACAAATCCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGTCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGTTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACGGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTAATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCCCAGGTGCTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAACGGCTTTTCAGACCTCTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGCGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGTAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGATC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAAGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

RQC domain (RQC)

(403-507)

DEAD/DEAH box helicase (DEAD)

(21-182)

HRDC domain (HRDC)

(518-583)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

99.154

100

0.992