Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   QMY17_RS06905 Genome accession   NZ_CP125812
Coordinates   1305165..1305875 (+) Length   236 a.a.
NCBI ID   WP_014480585.1    Uniprot ID   -
Organism   Bacillus subtilis strain N3378-3At     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1300165..1310875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS06885 ytfP 1300645..1301907 (-) 1263 WP_072557170.1 NAD(P)/FAD-dependent oxidoreductase -
  QMY17_RS06890 murJ 1302110..1303744 (+) 1635 WP_014480588.1 lipid II flippase MurJ -
  QMY17_RS06895 rsuA 1303813..1304532 (+) 720 WP_014480587.1 pseudouridine synthase -
  QMY17_RS06900 ytzE 1304654..1304875 (-) 222 WP_003152337.1 DeoR family transcriptional regulator -
  QMY17_RS06905 pptA 1305165..1305875 (+) 711 WP_014480585.1 ABC transporter ATP-binding protein Regulator
  QMY17_RS06910 ythQ 1305872..1307029 (+) 1158 WP_014480584.1 ABC transporter permease -
  QMY17_RS06915 pbuO 1307068..1308366 (-) 1299 WP_014480583.1 hypoxanthine/guanine permease PbuO -
  QMY17_RS06920 pepV 1308463..1309854 (+) 1392 WP_014480582.1 dipeptidase PepV -
  QMY17_RS06925 cysK 1309888..1310823 (-) 936 WP_003229237.1 cysteine synthase A -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26545.69 Da        Isoelectric Point: 5.8478

>NTDB_id=764109 QMY17_RS06905 WP_014480585.1 1305165..1305875(+) (pptA) [Bacillus subtilis strain N3378-3At]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEGREFVHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRL

Nucleotide


Download         Length: 711 bp        

>NTDB_id=764109 QMY17_RS06905 WP_014480585.1 1305165..1305875(+) (pptA) [Bacillus subtilis strain N3378-3At]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTAGTTGGACTGATCGGAGCTAACGGCGCCGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTTTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATTGAAGGGAGAGAATTTGTGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCTATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432