Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   O0R42_RS13775 Genome accession   NZ_CP114033
Coordinates   2891849..2892475 (-) Length   208 a.a.
NCBI ID   WP_017384804.1    Uniprot ID   A0AA37AJW2
Organism   Enterobacter hormaechei subsp. xiangfangensis strain IPPBiotE33     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2886849..2897475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0R42_RS13760 (O0R42_13750) helD 2887088..2889142 (-) 2055 WP_032653161.1 DNA helicase IV -
  O0R42_RS13765 (O0R42_13755) - 2889265..2889711 (+) 447 WP_003858149.1 YccF domain-containing protein -
  O0R42_RS13770 (O0R42_13760) yccS 2889730..2891892 (+) 2163 WP_015570895.1 YccS family putative transporter -
  O0R42_RS13775 (O0R42_13765) sxy/tfoX 2891849..2892475 (-) 627 WP_017384804.1 TfoX/Sxy family DNA transformation protein Regulator
  O0R42_RS13780 (O0R42_13770) sulA 2892693..2893202 (+) 510 WP_026094322.1 SOS-induced cell division inhibitor SulA -
  O0R42_RS13785 (O0R42_13775) ompA 2893559..2894611 (+) 1053 WP_017694761.1 porin OmpA -
  O0R42_RS13790 (O0R42_13780) matP 2894677..2895129 (-) 453 WP_006809347.1 macrodomain Ter protein MatP -
  O0R42_RS13795 (O0R42_13785) - 2895316..2897076 (+) 1761 WP_023296273.1 Lon protease family protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24018.63 Da        Isoelectric Point: 9.4592

>NTDB_id=764100 O0R42_RS13775 WP_017384804.1 2891849..2892475(-) (sxy/tfoX) [Enterobacter hormaechei subsp. xiangfangensis strain IPPBiotE33]
MKKISYDRIYQSQEYLSPLGEIHHRALFGGYTLAVDEAVFAMVSDGELYLRACEQSAKYCVKNASSFLTLMKRGRPVLLN
YYRVDEGLWQNREKLLQLSSFALDAARKERYQRHQRNRLKDLPNLTFQIEVLLMEAGITNEETLRQLGAKTSWLKMRSKN
KALSIRVLFALEGAIEGLHEAALPADIRRELMEWFNALPESQGHHSAR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=764100 O0R42_RS13775 WP_017384804.1 2891849..2892475(-) (sxy/tfoX) [Enterobacter hormaechei subsp. xiangfangensis strain IPPBiotE33]
ATGAAAAAGATATCTTATGATCGGATTTATCAATCTCAGGAATACCTCTCTCCGCTGGGCGAAATTCATCATCGCGCCCT
GTTTGGCGGTTATACCCTGGCCGTGGATGAAGCGGTGTTCGCGATGGTGTCTGACGGCGAGCTGTACCTTCGCGCCTGTG
AGCAAAGTGCAAAATACTGTGTAAAAAACGCCTCCTCTTTTCTGACCCTGATGAAACGAGGACGGCCAGTGCTGCTTAAT
TACTACCGTGTGGATGAAGGTCTGTGGCAAAACAGGGAAAAGCTGCTTCAGCTCTCCTCGTTTGCGCTCGATGCCGCCAG
GAAAGAGCGCTACCAGCGCCATCAGCGTAATCGGCTTAAGGATCTGCCGAACCTGACCTTTCAGATTGAGGTCCTGCTTA
TGGAGGCGGGCATTACCAATGAAGAGACGCTACGACAGTTGGGGGCGAAGACGAGCTGGCTGAAAATGCGCTCTAAGAAT
AAAGCGCTGAGTATCCGGGTATTGTTCGCGCTTGAAGGCGCCATCGAAGGGTTACATGAAGCGGCACTCCCGGCGGATAT
TCGCCGGGAGCTTATGGAGTGGTTTAATGCGCTGCCTGAGTCGCAGGGCCATCATTCCGCCAGGTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.911

97.115

0.572