Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   QMY17_RS03280 Genome accession   NZ_CP125812
Coordinates   633561..634283 (+) Length   240 a.a.
NCBI ID   WP_014481051.1    Uniprot ID   -
Organism   Bacillus subtilis strain N3378-3At     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 628561..639283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMY17_RS03255 degS 628871..630028 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  QMY17_RS03260 degU 630111..630800 (+) 690 WP_014481054.1 two-component system response regulator DegU -
  QMY17_RS03265 fakBA 630898..631743 (+) 846 WP_014481053.1 DegV family protein -
  QMY17_RS03270 comFA 631850..633241 (+) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  QMY17_RS03275 comFB 633301..633597 (+) 297 WP_003227989.1 late competence protein ComFB -
  QMY17_RS03280 comFC 633561..634283 (+) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  QMY17_RS03285 yvyF 634356..634775 (+) 420 WP_014481050.1 TIGR03826 family flagellar region protein -
  QMY17_RS03290 flgM 634856..635122 (+) 267 WP_318245634.1 flagellar biosynthesis anti-sigma factor FlgM -
  QMY17_RS03295 - 635252..636376 (-) 1125 WP_014478926.1 IS4-like element IS4Bsu1 family transposase -
  QMY17_RS03300 flgN 636553..637035 (+) 483 WP_014481048.1 flagellar protein FlgN -
  QMY17_RS03305 flgK 637054..638577 (+) 1524 WP_014481047.1 flagellar hook-associated protein FlgK -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27521.79 Da        Isoelectric Point: 9.3154

>NTDB_id=764094 QMY17_RS03280 WP_014481051.1 633561..634283(+) (comFC) [Bacillus subtilis strain N3378-3At]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=764094 QMY17_RS03280 WP_014481051.1 633561..634283(+) (comFC) [Bacillus subtilis strain N3378-3At]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterProScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

99.167

100

0.992