Detailed information NTG0764081

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: O0V01_RS26720
• Genome accession: NZ_CP114031
• Coordinates: 5870996..5872363 (-)
• Length: 455 a.a.
• NCBI ID: WP_284655616.1
• Uniprot ID: -
• Organism: Paenibacillus thiaminolyticus strain PATH554
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 5865996..5877363

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O0V01_RS26690 (O0V01_26705)	ispF	5865999..5866481 (-)	483	WP_284655612.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
O0V01_RS26695 (O0V01_26710)	ispD	5866564..5867277 (-)	714	WP_284655613.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
O0V01_RS26700 (O0V01_26715)	-	5867320..5868411 (-)	1092	WP_284655614.1	PIN/TRAM domain-containing protein	-
O0V01_RS26705 (O0V01_26720)	-	5868614..5869009 (+)	396	WP_087444210.1	DUF1573 domain-containing protein	-
O0V01_RS26710 (O0V01_26725)	pssA	5869123..5869851 (-)	729	WP_087444209.1	CDP-diacylglycerol--serine O-phosphatidyltransferase	-
O0V01_RS26715 (O0V01_26730)	disA	5869906..5870979 (-)	1074	WP_284655615.1	DNA integrity scanning diadenylate cyclase DisA	-
O0V01_RS26720 (O0V01_26735)	radA	5870996..5872363 (-)	1368	WP_284655616.1	DNA repair protein RadA	Machinery gene
O0V01_RS26725 (O0V01_26740)	clpC	5872608..5875046 (-)	2439	WP_272047093.1	ATP-dependent protease ATP-binding subunit ClpC	-
O0V01_RS26730 (O0V01_26745)	-	5875049..5876134 (-)	1086	WP_272047094.1	protein arginine kinase	-
O0V01_RS26735 (O0V01_26750)	-	5876194..5876757 (-)	564	WP_272047095.1	UvrB/UvrC motif-containing protein	-
O0V01_RS26740 (O0V01_26755)	-	5876856..5877320 (-)	465	WP_272826389.1	CtsR family transcriptional regulator	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 49266.81 Da
• Isoelectric Point: 6.4025

>NTDB_id=764081 O0V01_RS26720 WP_284655616.1 5870996..5872363(-) (radA) [Paenibacillus thiaminolyticus strain PATH554]
MAKVKTKFFCTDCGYESPKWMGKCPGCGEWNTMVEERETVVKTAGVHTSLIGTKEKPQSIIQIESKQEARLSTTIDELNR
VLGGGVVPGSLILVGGDPGIGKSTLLLQASNALAVSGLKVLYVSGEESTRQTKLRADRLGVLSERLFVLSETNLQYIEEA
IEAMSPDFLVIDSIQTVYQPSVESAPGSVAQVRECTSVCMRIAKGRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHSYRILRAVKNRFGSTNEIGIFEMTEGGLTEVKNPSEMFLQERPLGVSGSTVVASLEGTRPVLVEMQALVSATNFPS
PRRMSTGIDHQRLSLIIAVLEKRMGMFLQNQDAYVNVAGGLKLDEPAVDLAIAVALASSFRDMPTQAYDIVFGEVGLTGE
VRAVSRAEQRVKEAEKLGFKRIILPEKSLRGWTPSGHIEIVGVNTVAEALTAALG

Nucleotide

• Length: 1368 bp

>NTDB_id=764081 O0V01_RS26720 WP_284655616.1 5870996..5872363(-) (radA) [Paenibacillus thiaminolyticus strain PATH554]
ATGGCCAAAGTAAAAACCAAGTTTTTCTGTACGGATTGCGGATATGAATCACCGAAGTGGATGGGCAAATGCCCGGGCTG
CGGCGAGTGGAACACGATGGTGGAGGAGCGGGAGACGGTCGTCAAGACGGCGGGCGTCCACACATCCCTCATTGGGACGA
AAGAAAAACCGCAATCGATCATACAAATAGAAAGTAAACAGGAAGCGCGCCTGTCCACGACGATTGACGAATTGAACCGT
GTGCTCGGCGGCGGCGTGGTGCCGGGATCGCTCATCCTCGTGGGCGGTGACCCGGGCATCGGCAAATCGACGCTGCTGCT
CCAGGCTTCCAATGCGCTGGCAGTCAGCGGCTTGAAGGTGCTGTACGTGTCTGGTGAGGAATCGACGCGCCAGACGAAGC
TGCGCGCCGACCGGCTCGGGGTGCTGTCCGAGCGTCTGTTCGTCCTGAGCGAGACGAATTTGCAGTATATTGAAGAGGCA
ATCGAGGCCATGAGCCCCGATTTTCTCGTCATCGACTCGATCCAGACGGTATATCAGCCCTCGGTCGAATCGGCTCCCGG
CAGCGTGGCTCAAGTTCGCGAATGCACAAGCGTGTGCATGCGCATTGCGAAGGGAAGAGGCATCGCGACCGTCCTCGTCG
GCCATGTGACGAAGGAAGGAGCCATTGCCGGCCCCCGCATGCTGGAGCATATGGTGGACTGCGTGCTTTATTTCGAGGGC
GAGCGCCATCATTCGTACCGCATCCTGCGGGCCGTGAAGAACCGCTTCGGCTCCACGAACGAGATCGGCATCTTCGAGAT
GACGGAAGGCGGCTTGACGGAAGTGAAGAATCCGTCCGAGATGTTCCTTCAGGAACGCCCGCTTGGCGTCTCCGGCTCGA
CGGTCGTCGCCAGCTTGGAAGGGACGCGCCCGGTTCTTGTCGAGATGCAGGCGCTCGTGTCGGCGACGAACTTCCCTTCG
CCGCGGAGAATGTCGACGGGAATCGATCATCAGCGGTTGTCGCTCATCATCGCCGTGCTGGAGAAGCGCATGGGCATGTT
CCTTCAGAACCAGGACGCCTATGTGAATGTGGCCGGCGGGTTGAAGCTCGATGAGCCGGCTGTCGATCTCGCCATTGCCG
TCGCCTTGGCGTCGAGCTTCCGCGATATGCCGACCCAGGCATATGACATCGTCTTCGGCGAAGTGGGACTGACCGGAGAA
GTGCGCGCGGTGTCCCGTGCGGAGCAGCGCGTGAAGGAAGCCGAGAAGCTGGGCTTCAAGCGGATTATTTTGCCAGAGAA
AAGCCTGCGGGGATGGACCCCTTCTGGACATATTGAGATAGTGGGCGTAAATACGGTAGCGGAAGCATTGACCGCAGCGT
TAGGTTAG

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-35)

• Subunit ChlI of Mg-chelatase (ChlI) (344-427)

• AAA domain (AAA_25) (62-220)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	65.864	100	0.662
radA	Streptococcus mitis NCTC 12261	58.444	98.901	0.578
radA	Streptococcus mitis SK321	58.444	98.901	0.578
radA	Streptococcus pneumoniae Rx1	58.222	98.901	0.576
radA	Streptococcus pneumoniae D39	58.222	98.901	0.576
radA	Streptococcus pneumoniae R6	58.222	98.901	0.576
radA	Streptococcus pneumoniae TIGR4	58.222	98.901	0.576