Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   O0V01_RS25840 Genome accession   NZ_CP114031
Coordinates   5688895..5689848 (-) Length   317 a.a.
NCBI ID   WP_087444499.1    Uniprot ID   -
Organism   Paenibacillus thiaminolyticus strain PATH554     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5683895..5694848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0V01_RS25820 (O0V01_25835) - 5685295..5685519 (+) 225 Protein_5085 BlaI/MecI/CopY family transcriptional regulator -
  O0V01_RS25825 (O0V01_25840) - 5686119..5687081 (-) 963 WP_284655539.1 siderophore ABC transporter substrate-binding protein -
  O0V01_RS25830 (O0V01_25845) - 5687203..5687961 (-) 759 WP_272046963.1 ABC transporter ATP-binding protein -
  O0V01_RS25835 (O0V01_25850) - 5687955..5688905 (-) 951 WP_272046964.1 iron chelate uptake ABC transporter family permease subunit -
  O0V01_RS25840 (O0V01_25855) ceuB 5688895..5689848 (-) 954 WP_087444499.1 ABC transporter permease Machinery gene
  O0V01_RS25845 (O0V01_25860) - 5690313..5691497 (-) 1185 WP_284658312.1 dicarboxylate/amino acid:cation symporter -
  O0V01_RS25850 (O0V01_25865) - 5691682..5691951 (-) 270 WP_087444498.1 YqkE family protein -
  O0V01_RS25855 (O0V01_25870) - 5692187..5692741 (+) 555 WP_284655540.1 PadR family transcriptional regulator -
  O0V01_RS25860 (O0V01_25875) - 5692754..5693227 (+) 474 WP_284655541.1 DUF4188 domain-containing protein -
  O0V01_RS25865 (O0V01_25880) infC 5693286..5693774 (-) 489 WP_284655542.1 translation initiation factor IF-3 -
  O0V01_RS25870 (O0V01_25885) - 5693838..5694170 (+) 333 WP_284655543.1 hypothetical protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35237.63 Da        Isoelectric Point: 10.1878

>NTDB_id=764080 O0V01_RS25840 WP_087444499.1 5688895..5689848(-) (ceuB) [Paenibacillus thiaminolyticus strain PATH554]
MKKRYLVIALILFAFISLFIGVIDIKPWDLFNLNDDKVHTFLVSRVPRLISIILAGVSMSICGLIMQQLSRNKFVSPTTA
GTLDSARLGILVSLMLFTTASPLVKMLVAFVFALAGTMLFMKILDRIKFKDTIFIPLVGLMFGNIISSISTFFAYKYDLI
QNMSSWLQGDFSMIIKGRYELLYISIPLLVIAYLYANKFTVAGMGEDFSKNLGLNYKRVVNIGLILVALVTCTVVLTVGT
IPFLGLIIPNIVSIYRGDNLKNSLSHTALLGAVFVLFCDILGRIIIFPYELSISLTVGVIGSAIFVYMLMRRRAHGL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=764080 O0V01_RS25840 WP_087444499.1 5688895..5689848(-) (ceuB) [Paenibacillus thiaminolyticus strain PATH554]
ATGAAGAAGAGATATCTGGTTATTGCGCTTATCCTGTTTGCCTTCATTTCCCTGTTTATCGGGGTCATAGACATTAAGCC
GTGGGATTTGTTCAATCTGAACGACGACAAGGTTCATACTTTTCTCGTCAGCCGGGTGCCAAGGCTTATCAGTATCATTC
TCGCCGGGGTCAGCATGAGTATATGCGGCCTGATTATGCAGCAGCTTAGCCGGAACAAGTTCGTCTCGCCCACGACGGCA
GGAACGCTTGACTCGGCTCGCTTGGGGATACTCGTCTCTTTGATGCTGTTCACGACCGCGAGCCCGTTGGTGAAGATGCT
CGTTGCGTTCGTCTTCGCTTTGGCAGGCACGATGCTGTTCATGAAGATATTGGATCGCATCAAATTCAAAGACACCATCT
TCATTCCGCTCGTCGGATTGATGTTTGGCAATATTATTAGTTCCATTTCCACCTTTTTTGCATATAAGTATGATTTGATT
CAGAACATGTCCTCGTGGCTGCAGGGCGACTTCTCGATGATTATTAAGGGGCGCTATGAGCTGCTGTATATCAGCATTCC
GCTTCTCGTGATTGCATACCTGTATGCGAACAAGTTCACGGTAGCAGGGATGGGCGAGGATTTCTCGAAGAACCTCGGGC
TCAACTACAAGCGCGTGGTCAACATCGGCTTGATCCTGGTGGCGCTCGTTACGTGCACGGTCGTGCTTACCGTTGGAACG
ATTCCTTTCCTGGGTCTCATTATTCCGAATATCGTTTCCATTTACCGAGGCGATAATTTGAAGAATAGCTTGTCGCATAC
CGCGCTTCTCGGGGCCGTATTCGTTCTGTTCTGCGATATTTTGGGACGCATCATCATCTTCCCGTATGAATTGTCGATCA
GCTTGACGGTCGGCGTCATCGGAAGTGCCATATTCGTCTATATGTTAATGAGGAGAAGGGCACATGGGTTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.355

98.738

0.527