Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   LDO79_RS07885 Genome accession   NZ_AP024984
Coordinates   1479046..1479513 (-) Length   155 a.a.
NCBI ID   WP_011173597.1    Uniprot ID   Q72IE6
Organism   Thermus thermophilus strain JCM10941     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1474046..1484513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO79_RS07860 (JCM10941_15280) - 1474244..1474657 (+) 414 WP_011228753.1 PaaI family thioesterase -
  LDO79_RS07865 (JCM10941_15290) - 1474631..1475593 (-) 963 WP_011228754.1 dipeptidase -
  LDO79_RS07870 (JCM10941_15300) uvrC 1475616..1477388 (+) 1773 WP_011228755.1 excinuclease ABC subunit UvrC -
  LDO79_RS07875 (JCM10941_15310) - 1477451..1478374 (-) 924 WP_011173595.1 ribose-phosphate pyrophosphokinase -
  LDO79_RS07880 (JCM10941_15320) mtnN 1478387..1479049 (-) 663 WP_011228756.1 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase -
  LDO79_RS07885 (JCM10941_15330) luxS 1479046..1479513 (-) 468 WP_011173597.1 S-ribosylhomocysteine lyase Regulator
  LDO79_RS07890 (JCM10941_15340) guaA 1479628..1481139 (+) 1512 WP_011228757.1 glutamine-hydrolyzing GMP synthase -
  LDO79_RS07895 (JCM10941_15350) - 1481139..1481702 (+) 564 WP_164926060.1 Uma2 family endonuclease -
  LDO79_RS07900 (JCM10941_15360) - 1481727..1482014 (+) 288 WP_011228759.1 glutamine synthetase/cystathionine beta-lyase binding protein -
  LDO79_RS07905 (JCM10941_15370) - 1482014..1482400 (+) 387 WP_011228760.1 VOC family protein -
  LDO79_RS07910 (JCM10941_15380) rnhA 1482397..1482897 (+) 501 WP_011228761.1 ribonuclease HI -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16823.34 Da        Isoelectric Point: 6.7534

>NTDB_id=76405 LDO79_RS07885 WP_011173597.1 1479046..1479513(-) (luxS) [Thermus thermophilus strain JCM10941]
MAEVESFSLDHTKVKAPYVRLAGRKALAGGVVEKYDLRLAQPNREALPTGALHTLEHLLAGYLRDHLPGVIDLSPMGCRT
GFYLVVEGPVGEEKVLEAFAQALKDVLAHEGEVPGASFRECGNYRDHDLPGAKAWAEKVLKAGLRVQATVPLEAR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=76405 LDO79_RS07885 WP_011173597.1 1479046..1479513(-) (luxS) [Thermus thermophilus strain JCM10941]
ATGGCCGAGGTGGAGAGCTTCAGCCTGGACCACACCAAGGTCAAGGCCCCCTACGTGCGCCTGGCGGGGAGGAAGGCCCT
CGCGGGGGGCGTGGTGGAGAAGTACGACCTGAGGCTTGCCCAGCCCAACCGGGAGGCCCTGCCCACGGGGGCCTTGCACA
CCCTGGAGCACCTCCTCGCGGGGTATTTGCGGGACCACCTCCCGGGGGTCATTGACCTCTCCCCCATGGGCTGCCGCACG
GGGTTTTACCTGGTGGTGGAAGGCCCCGTGGGGGAGGAAAAGGTCCTCGAGGCCTTCGCCCAGGCCTTGAAGGACGTCCT
CGCCCACGAGGGGGAGGTCCCCGGGGCGAGCTTCAGGGAGTGCGGCAACTACCGGGACCATGACCTTCCTGGCGCCAAGG
CCTGGGCGGAGAAGGTGCTAAAGGCGGGGCTTAGGGTCCAGGCCACCGTTCCCCTGGAGGCGAGGTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(3-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q72IE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.558

99.355

0.413