Detailed information NTG0764026

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QMO65_RS19955
• Genome accession: NZ_CP125780
• Coordinates: 4255910..4256914 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain HPHA13
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4250910..4261914

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMO65_RS19940 (QMO65_19940)	-	4251394..4252401 (+)	1008	WP_003117491.1	TolB family protein	-
QMO65_RS19945 (QMO65_19945)	mutS	4252527..4255094 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
QMO65_RS19950 (QMO65_19950)	fdxA	4255161..4255484 (+)	324	WP_003119354.1	ferredoxin FdxA	-
QMO65_RS19955 (QMO65_19955)	rpoS	4255910..4256914 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
QMO65_RS19960 (QMO65_19960)	-	4257019..4257912 (-)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
QMO65_RS19965 (QMO65_19965)	-	4257958..4258593 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QMO65_RS19970 (QMO65_19970)	surE	4258626..4259375 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
QMO65_RS19975 (QMO65_19975)	truD	4259363..4260430 (-)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
QMO65_RS19980 (QMO65_19980)	ispF	4260427..4260900 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QMO65_RS19985 (QMO65_19985)	fghA	4260971..4261822 (-)	852	WP_009876912.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=764026 QMO65_RS19955 WP_003113871.1 4255910..4256914(-) (rpoS) [Pseudomonas aeruginosa strain HPHA13]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=764026 QMO65_RS19955 WP_003113871.1 4255910..4256914(-) (rpoS) [Pseudomonas aeruginosa strain HPHA13]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653