Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   QLQ05_RS21215 Genome accession   NZ_CP125762
Coordinates   3956094..3956528 (-) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain KRS015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3951094..3961528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ05_RS21200 epsK 3951723..3952574 (-) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -
  QLQ05_RS21205 - 3952555..3953643 (-) 1089 WP_003246551.1 lipoprotein -
  QLQ05_RS21210 topB 3953846..3956029 (-) 2184 WP_003246684.1 DNA topoisomerase III -
  QLQ05_RS21215 lrpC 3956094..3956528 (-) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  QLQ05_RS21220 ydzA 3956713..3957003 (+) 291 WP_003246602.1 DUF3817 domain-containing protein -
  QLQ05_RS21225 amj 3957047..3957856 (-) 810 WP_003234394.1 lipid II flippase Amj -
  QLQ05_RS21230 ydaG 3958362..3958784 (-) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  QLQ05_RS21235 ydaF 3958862..3959413 (-) 552 WP_003246691.1 GNAT family protein -
  QLQ05_RS21240 lyxE 3959499..3960002 (-) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  QLQ05_RS21245 ydaD 3960018..3960878 (-) 861 WP_003246648.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=763954 QLQ05_RS21215 WP_003246585.1 3956094..3956528(-) (lrpC) [Bacillus subtilis strain KRS015]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=763954 QLQ05_RS21215 WP_003246585.1 3956094..3956528(-) (lrpC) [Bacillus subtilis strain KRS015]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1