Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OZP07_RS20940 Genome accession   NZ_CP113975
Coordinates   5041900..5043261 (+) Length   453 a.a.
NCBI ID   WP_281636632.1    Uniprot ID   -
Organism   Flavobacterium marginilacus strain IMCC34673     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5036900..5048261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZP07_RS20920 - 5038436..5039242 (-) 807 WP_281636628.1 glycogen/starch synthase -
  OZP07_RS20925 panC 5039350..5040198 (+) 849 WP_281636629.1 pantoate--beta-alanine ligase -
  OZP07_RS20930 panD 5040205..5040555 (+) 351 WP_281636630.1 aspartate 1-decarboxylase -
  OZP07_RS20935 - 5040641..5041897 (+) 1257 WP_281636631.1 alpha/beta hydrolase-fold protein -
  OZP07_RS20940 radA 5041900..5043261 (+) 1362 WP_281636632.1 DNA repair protein RadA Machinery gene
  OZP07_RS20945 - 5043301..5045262 (+) 1962 WP_281636633.1 biosynthetic peptidoglycan transglycosylase -
  OZP07_RS20950 - 5045280..5045618 (+) 339 WP_281636634.1 SdpI family protein -
  OZP07_RS20955 serS 5045925..5047196 (+) 1272 WP_281636635.1 serine--tRNA ligase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49953.39 Da        Isoelectric Point: 6.3732

>NTDB_id=763942 OZP07_RS20940 WP_281636632.1 5041900..5043261(+) (radA) [Flavobacterium marginilacus strain IMCC34673]
MSKVKTTFFCQNCGAQYSKWQGQCNSCREWNTIAEEIIQKQEKVAWKSEQSTTSKAPKPLRINEIDSTEEIRLNTTDNEL
NRVLGGGIVPGSLILLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERITPNGDNCFILTETKTQNIFKQI
EAIQPEIVIIDSIQTLHTDYIESTAGSISQIRETTAELIKFAKETNIPVILIGHITKDGTIAGPKILEHMVDTVLQFEGD
RNHVYRILRSLKNRFGSTAEIGIYEMLGSGLREVSNPSEILISHKDEELSGTAIATTLEGMRPLMIEIQSLVSTAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGAKDVFLNVTGGISVDDPAIDLAVVAAILSSNEDIPVNKDYCFAGEVGLSGEI
RPVNRVDQRIQEAEKLGFSTIFVSKYNKIALKNTGIKIQLVAKIEDVASMLFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=763942 OZP07_RS20940 WP_281636632.1 5041900..5043261(+) (radA) [Flavobacterium marginilacus strain IMCC34673]
ATGTCCAAAGTAAAAACAACTTTTTTTTGCCAGAATTGCGGTGCCCAATATTCCAAATGGCAGGGGCAGTGTAATTCATG
CAGAGAATGGAACACTATTGCCGAGGAAATTATTCAAAAGCAGGAAAAAGTGGCTTGGAAAAGCGAGCAGTCCACAACTA
GCAAAGCGCCAAAACCATTAAGGATCAATGAAATTGACAGTACAGAAGAAATCAGACTCAATACTACTGACAATGAGCTG
AACAGAGTTCTGGGAGGCGGAATTGTTCCTGGCTCTCTAATACTTTTAGGAGGAGAACCTGGTATTGGAAAGAGTACTTT
GTTGCTGCAGATTTCTTTAAAATTACCATACAAAACCTTATACGTTTCGGGTGAGGAAAGCCAAAAGCAGATTAAGATGC
GTGCTGAGCGTATTACTCCAAATGGAGATAACTGCTTTATCCTTACAGAAACTAAAACACAGAATATCTTTAAGCAGATT
GAAGCCATTCAGCCCGAAATTGTCATAATTGATTCGATTCAGACTTTGCATACCGATTATATCGAATCGACCGCCGGAAG
TATTTCTCAAATACGGGAAACCACAGCCGAATTGATCAAATTTGCCAAAGAAACCAATATTCCCGTAATATTAATTGGTC
ATATCACCAAAGACGGAACGATTGCCGGACCAAAAATATTGGAACATATGGTTGATACTGTACTTCAATTTGAAGGTGAC
AGAAATCATGTTTACCGCATTTTACGTTCGCTAAAAAACCGTTTTGGGTCAACTGCAGAGATTGGTATCTACGAAATGCT
TGGAAGCGGACTTCGGGAAGTATCCAATCCTTCCGAAATATTGATTTCGCACAAAGACGAAGAACTATCAGGAACGGCCA
TTGCTACCACACTAGAAGGTATGCGTCCGCTGATGATCGAAATTCAATCGCTGGTAAGTACCGCAGTATATGGAACTCCA
CAAAGAAGCACCACAGGTTATAACGCCAAAAGACTGAATATGATTTTAGCCGTTTTGGAAAAAAGAGCCGGTTTTAGACT
TGGCGCAAAAGATGTTTTCCTGAATGTAACCGGAGGAATTTCTGTTGACGACCCTGCCATCGATTTGGCCGTTGTTGCAG
CAATTTTATCATCTAATGAAGACATTCCGGTCAACAAAGATTACTGCTTTGCAGGCGAAGTTGGTCTTTCTGGCGAAATC
CGTCCTGTAAACCGAGTAGATCAGCGCATCCAGGAAGCTGAAAAATTAGGATTTTCTACTATTTTTGTATCCAAGTACAA
TAAAATAGCTTTAAAAAATACCGGAATCAAAATTCAGCTGGTTGCCAAAATTGAAGATGTGGCGAGTATGCTTTTTGGAT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(316-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

49.342

100

0.497
  radA Streptococcus pneumoniae Rx1

51.054

94.26

0.481
  radA Streptococcus pneumoniae D39

51.054

94.26

0.481
  radA Streptococcus mitis NCTC 12261

51.054

94.26

0.481
  radA Streptococcus pneumoniae R6

51.054

94.26

0.481
  radA Streptococcus pneumoniae TIGR4

51.054

94.26

0.481
  radA Bacillus subtilis subsp. subtilis str. 168

47.702

100

0.481