Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   OZ175_RS18185 Genome accession   NZ_CP113974
Coordinates   3856857..3857414 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain M6A146     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3851857..3862414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZ175_RS18165 (OZ175_18165) pilR 3853133..3854470 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  OZ175_RS18170 (OZ175_18170) thiO 3854516..3855610 (-) 1095 WP_023087807.1 glycine oxidase ThiO -
  OZ175_RS18175 (OZ175_18175) - 3855745..3856254 (+) 510 WP_003102595.1 GspH/FimT family pseudopilin -
  OZ175_RS18180 (OZ175_18180) - 3856360..3856866 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  OZ175_RS18185 (OZ175_18185) pilV 3856857..3857414 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  OZ175_RS18190 (OZ175_18190) pilW 3857411..3858235 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  OZ175_RS18195 (OZ175_18195) pilX 3858232..3858819 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  OZ175_RS18200 (OZ175_18200) pilY1 3858831..3862322 (+) 3492 WP_268858252.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=763920 OZ175_RS18185 WP_003119423.1 3856857..3857414(+) (pilV) [Pseudomonas aeruginosa strain M6A146]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=763920 OZ175_RS18185 WP_003119423.1 3856857..3857414(+) (pilV) [Pseudomonas aeruginosa strain M6A146]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995