Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   QLQ05_RS15395 Genome accession   NZ_CP125762
Coordinates   2863711..2864160 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain KRS015     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2858711..2869160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ05_RS15365 sepM 2858790..2859815 (-) 1026 WP_003245451.1 protease DdcP Regulator
  QLQ05_RS15370 ylbK 2859817..2860599 (-) 783 WP_003232221.1 patatin family protein -
  QLQ05_RS15375 spoVV 2860780..2862006 (+) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  QLQ05_RS15380 coaD 2862017..2862502 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  QLQ05_RS15385 rsmD 2862507..2863061 (-) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  QLQ05_RS15390 ylbG 2863384..2863656 (-) 273 WP_009967171.1 YlbG family protein -
  QLQ05_RS15395 ylbF 2863711..2864160 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  QLQ05_RS15400 ylbE 2864276..2864515 (-) 240 WP_003232231.1 YlbE-like family protein -
  QLQ05_RS15405 ylbD 2864531..2864929 (-) 399 WP_003232233.1 YlbD family protein -
  QLQ05_RS15410 ylbC 2865161..2866201 (-) 1041 WP_003245434.1 CAP domain-containing protein -
  QLQ05_RS15415 ylbB 2866285..2866731 (-) 447 WP_003221362.1 CBS domain-containing protein -
  QLQ05_RS15420 ylbA 2866871..2867233 (+) 363 WP_003232238.1 YugN family protein -
  QLQ05_RS15425 ctaG 2867265..2868158 (-) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  QLQ05_RS15430 ctaF 2868185..2868517 (-) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  QLQ05_RS15435 ctaE 2868520..2869143 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=763909 QLQ05_RS15395 WP_003221370.1 2863711..2864160(-) (ylbF) [Bacillus subtilis strain KRS015]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=763909 QLQ05_RS15395 WP_003221370.1 2863711..2864160(-) (ylbF) [Bacillus subtilis strain KRS015]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1