Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LDO79_RS06225 Genome accession   NZ_AP024984
Coordinates   1162988..1163356 (+) Length   122 a.a.
NCBI ID   WP_011228527.1    Uniprot ID   Q5SIZ3
Organism   Thermus thermophilus strain JCM10941     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1157988..1168356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO79_RS06195 (JCM10941_12000) - 1158007..1158987 (-) 981 WP_011228521.1 YpdA family putative bacillithiol disulfide reductase -
  LDO79_RS06200 (JCM10941_12010) pilA/pilA1 1159145..1159615 (+) 471 WP_011228522.1 GspH/FimT family protein Machinery gene
  LDO79_RS06205 (JCM10941_12020) - 1159700..1160137 (+) 438 WP_231834457.1 GspH/FimT family protein -
  LDO79_RS06210 (JCM10941_12030) - 1160163..1160495 (+) 333 WP_224065211.1 prepilin -
  LDO79_RS06215 (JCM10941_12040) - 1160492..1161202 (+) 711 WP_011228525.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LDO79_RS06220 (JCM10941_12050) - 1161216..1162715 (+) 1500 WP_011228526.1 PilX N-terminal domain-containing pilus assembly protein -
  LDO79_RS06225 (JCM10941_12060) pilV 1162988..1163356 (+) 369 WP_011228527.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  LDO79_RS06230 (JCM10941_12070) - 1163415..1163786 (+) 372 WP_011228528.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LDO79_RS06235 (JCM10941_12080) - 1163979..1164740 (+) 762 WP_011228529.1 DUF1640 domain-containing protein -
  LDO79_RS06240 - 1164816..1165353 (+) 538 Protein_1210 Uma2 family endonuclease -
  LDO79_RS06245 (JCM10941_12100) - 1165350..1165907 (-) 558 WP_011228531.1 Uma2 family endonuclease -
  LDO79_RS06250 (JCM10941_12110) - 1165926..1166582 (-) 657 WP_011228532.1 chromosome segregation protein ScpA -
  LDO79_RS06255 (JCM10941_12120) trpS 1166579..1167592 (-) 1014 WP_011173293.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 12854.57 Da        Isoelectric Point: 6.1490

>NTDB_id=76390 LDO79_RS06225 WP_011228527.1 1162988..1163356(+) (pilV) [Thermus thermophilus strain JCM10941]
MRNAKGFTLIELLIVIAIIAILAAVLIPNLLNARRNANTTAAQAYVRNVATAVEAERDPTTGALPQLPQACDQFVANPPA
SVTQCNVTANNDGVNFTVTAQLTGARYGSVSFDSSTGQFSFQ

Nucleotide


Download         Length: 369 bp        

>NTDB_id=76390 LDO79_RS06225 WP_011228527.1 1162988..1163356(+) (pilV) [Thermus thermophilus strain JCM10941]
ATGCGGAACGCGAAAGGCTTCACCCTGATTGAGCTCCTGATCGTCATCGCCATCATCGCCATCCTGGCTGCGGTTCTCAT
TCCGAACCTTCTCAACGCTCGGAGGAACGCCAACACCACGGCCGCCCAGGCCTACGTGCGCAACGTGGCTACGGCGGTGG
AGGCCGAAAGGGATCCCACCACTGGAGCGTTGCCCCAGCTTCCTCAGGCCTGTGACCAATTCGTCGCAAACCCCCCTGCC
TCGGTCACGCAATGCAACGTTACAGCTAACAACGACGGCGTCAACTTCACGGTTACCGCCCAATTGACCGGGGCCCGGTA
CGGTTCTGTCTCGTTTGACAGCTCCACCGGGCAGTTTAGCTTCCAGTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin A4 (PilA4)

(38-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4BHR

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.818

90.164

0.467