Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OYT09_RS23245 Genome accession   NZ_CP113973
Coordinates   5155796..5157169 (-) Length   457 a.a.
NCBI ID   WP_013312184.1    Uniprot ID   A0A0M1Q9A3
Organism   Paenibacillus polymyxa strain P3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5150796..5162169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OYT09_RS23220 (OYT09_23235) ispF 5151386..5151862 (-) 477 WP_025723806.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  OYT09_RS23225 (OYT09_23240) ispD 5151859..5152557 (-) 699 WP_134903071.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  OYT09_RS23230 (OYT09_23245) - 5152628..5153713 (-) 1086 WP_103050268.1 PIN/TRAM domain-containing protein -
  OYT09_RS23235 (OYT09_23250) pssA 5153906..5154652 (-) 747 WP_025723803.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  OYT09_RS23240 (OYT09_23255) disA 5154707..5155783 (-) 1077 WP_013312183.1 DNA integrity scanning diadenylate cyclase DisA -
  OYT09_RS23245 (OYT09_23260) radA 5155796..5157169 (-) 1374 WP_013312184.1 DNA repair protein RadA Machinery gene
  OYT09_RS23250 (OYT09_23265) clpC 5157410..5159854 (-) 2445 WP_023990572.1 ATP-dependent protease ATP-binding subunit ClpC -
  OYT09_RS23255 (OYT09_23270) - 5159899..5160963 (-) 1065 WP_025722319.1 protein arginine kinase -
  OYT09_RS23260 (OYT09_23275) - 5160992..5161516 (-) 525 WP_272639253.1 UvrB/UvrC motif-containing protein -
  OYT09_RS23265 (OYT09_23280) - 5161586..5162050 (-) 465 WP_013312188.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49244.92 Da        Isoelectric Point: 6.7620

>NTDB_id=763899 OYT09_RS23245 WP_013312184.1 5155796..5157169(-) (radA) [Paenibacillus polymyxa strain P3]
MAKVKTKFSCTECGYESPKWYGKCPGCQAWNSMVEETESVVKTQGMGSSLLTHSTKDKPLPIIEVESGKETRILTGIGEL
NRVLGGGVVPGSLVLVGGDPGIGKSTLMLQTSNELALTGLKVLYVSGEESVRQTKLRADRLGALSPSLYVLCETNLETIE
EAVDSLKPEFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGLGIATVLVGHVTKEGAIAGPRLLEHMVDCVLYF
EGERHHTYRLLRAVKNRFGSTNEIGIFEMAESGLREVSNPSELFLSERPLGVAGSTVVASMEGTRPVLVELQALIAATHF
PSPRRMGTGVDHHRMGLIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDAPTKPYDVIFGEVGLT
GEVRAVSRAEQRVREAEKLGFKRVIMPEKSLKGWTHPKGIQIIGVGTVADALAAALD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=763899 OYT09_RS23245 WP_013312184.1 5155796..5157169(-) (radA) [Paenibacillus polymyxa strain P3]
ATGGCTAAAGTGAAAACTAAATTTTCCTGTACGGAATGTGGTTATGAATCGCCCAAATGGTACGGAAAATGTCCTGGATG
CCAGGCATGGAATTCCATGGTCGAAGAAACGGAAAGCGTTGTAAAAACTCAAGGAATGGGGTCTTCCCTTCTTACTCATA
GCACAAAAGACAAGCCACTCCCTATTATAGAGGTGGAGAGTGGCAAAGAAACACGAATTTTGACGGGAATTGGCGAATTG
AATCGAGTACTCGGTGGAGGTGTGGTGCCGGGTTCACTCGTTTTGGTGGGCGGTGATCCGGGAATCGGTAAATCTACGCT
CATGCTGCAAACATCTAATGAACTGGCTTTAACTGGTTTAAAGGTGCTGTACGTGTCTGGCGAGGAATCTGTCCGTCAAA
CGAAACTCCGTGCAGATCGGCTAGGTGCCTTGTCCCCCAGCCTATACGTATTATGTGAGACGAATTTGGAGACGATTGAA
GAAGCGGTGGACAGCTTGAAGCCGGAGTTTTTGGTCATCGACTCGATACAGACTGTATATTTGCCTGAGGTGACGAGTGC
ACCAGGTAGTGTGGCTCAGGTGCGAGAGTGTACTTCCCGCTTTATGCGAATTGCCAAGGGGCTAGGTATTGCTACGGTAT
TGGTAGGACATGTGACCAAGGAAGGGGCCATTGCAGGTCCACGTTTGTTGGAACATATGGTCGATTGTGTGCTTTATTTT
GAAGGAGAGCGTCATCATACGTATCGGCTTTTGCGTGCAGTTAAAAATCGTTTCGGTTCTACGAATGAAATTGGTATTTT
TGAAATGGCTGAAAGCGGTTTGCGTGAGGTGTCGAATCCTTCTGAATTATTCCTGTCTGAACGACCACTGGGGGTGGCGG
GTTCTACTGTTGTAGCCAGTATGGAGGGAACCCGACCTGTATTGGTTGAACTGCAAGCATTGATTGCAGCTACGCATTTC
CCATCTCCGCGCCGAATGGGCACAGGAGTCGACCATCATCGAATGGGATTAATCATAGCCGTGCTAGAAAAGCGGATGGG
CATGTTTTTGCAAAACCAGGACGCTTATCTCAACGTAGCCGGAGGCGTGAAGCTGGATGAACCGGCGGTGGATTTGGCTA
TAGCTGTGAGCATTGCTTCCAGCTTCAGGGATGCTCCTACAAAGCCGTACGATGTGATTTTTGGCGAGGTGGGACTGACA
GGTGAAGTGCGCGCGGTATCCCGAGCAGAACAGCGAGTACGAGAAGCGGAGAAACTAGGTTTCAAACGGGTGATCATGCC
GGAGAAAAGCTTGAAGGGCTGGACACATCCGAAAGGGATACAAATTATAGGAGTAGGAACGGTGGCAGATGCACTGGCAG
CCGCATTAGATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(349-429)

AAA domain (AAA_25)

(79-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M1Q9A3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.031

100

0.672
  radA Streptococcus pneumoniae Rx1

58.85

98.906

0.582
  radA Streptococcus pneumoniae D39

58.85

98.906

0.582
  radA Streptococcus pneumoniae R6

58.85

98.906

0.582
  radA Streptococcus pneumoniae TIGR4

58.85

98.906

0.582
  radA Streptococcus mitis NCTC 12261

58.85

98.906

0.582
  radA Streptococcus mitis SK321

58.628

98.906

0.58