Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   QLQ05_RS14380 Genome accession   NZ_CP125762
Coordinates   2657773..2658204 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain KRS015     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2652773..2663204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ05_RS14370 hexA 2654257..2656833 (-) 2577 WP_003244841.1 DNA mismatch repair protein MutS Machinery gene
  QLQ05_RS14375 cotE 2656966..2657511 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  QLQ05_RS14380 ymcA 2657773..2658204 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  QLQ05_RS14385 miaB 2658206..2659735 (-) 1530 WP_003244831.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  QLQ05_RS14390 kbl 2659883..2661061 (-) 1179 WP_003231837.1 glycine C-acetyltransferase -
  QLQ05_RS14395 tdh 2661074..2662117 (-) 1044 WP_003244880.1 L-threonine 3-dehydrogenase -
  QLQ05_RS14400 spoVS 2662383..2662643 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=763897 QLQ05_RS14380 WP_003231834.1 2657773..2658204(-) (ymcA) [Bacillus subtilis strain KRS015]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=763897 QLQ05_RS14380 WP_003231834.1 2657773..2658204(-) (ymcA) [Bacillus subtilis strain KRS015]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1