Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   OYT09_RS22035 Genome accession   NZ_CP113973
Coordinates   4891312..4892265 (-) Length   317 a.a.
NCBI ID   WP_134902789.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain P3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4886312..4897265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OYT09_RS22010 (OYT09_22025) - 4886781..4887692 (-) 912 WP_272639137.1 aldo/keto reductase -
  OYT09_RS22015 (OYT09_22030) - 4887850..4888593 (-) 744 WP_272639138.1 alpha/beta hydrolase -
  OYT09_RS22020 (OYT09_22035) - 4888627..4889607 (-) 981 WP_272639139.1 siderophore ABC transporter substrate-binding protein -
  OYT09_RS22025 (OYT09_22040) - 4889620..4890378 (-) 759 WP_134902791.1 ABC transporter ATP-binding protein -
  OYT09_RS22030 (OYT09_22045) - 4890372..4891322 (-) 951 WP_134902790.1 iron chelate uptake ABC transporter family permease subunit -
  OYT09_RS22035 (OYT09_22050) ceuB 4891312..4892265 (-) 954 WP_134902789.1 ABC transporter permease Machinery gene
  OYT09_RS22040 (OYT09_22055) - 4892596..4893273 (+) 678 WP_272640947.1 response regulator transcription factor -
  OYT09_RS22045 (OYT09_22060) - 4893299..4894192 (+) 894 WP_420793113.1 sensor histidine kinase -
  OYT09_RS22050 (OYT09_22065) - 4894301..4894978 (+) 678 WP_250260394.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34718.70 Da        Isoelectric Point: 9.9012

>NTDB_id=763897 OYT09_RS22035 WP_134902789.1 4891312..4892265(-) (ceuB) [Paenibacillus polymyxa strain P3]
MKLRYLIVAFLVLAFASVFIGVHDVTPLDVFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=763897 OYT09_RS22035 WP_134902789.1 4891312..4892265(-) (ceuB) [Paenibacillus polymyxa strain P3]
ATGAAATTGCGTTATTTAATAGTGGCTTTTCTGGTACTGGCCTTCGCCTCGGTTTTTATTGGTGTTCATGATGTAACTCC
ACTTGATGTGTTCCACTTAACCAACGATCAGGCGCAGGTGCTCCTGATTAGCAGATTCCCACGTTTGATCAGTATCATTA
TCGCAGGGGCGAGTATGAGTATCTGTGGGCTCATTATGCAGCAGCTTACCCGGAACCGATTCGTATCGCCCACCACCGCA
GGAACGATGGATGCGGCACGATTGGGTGTGCTGATGGCTATTATGGTGTTTGGAGCGGCGGGATTTTGGACGAAAATGCT
GACGGCTTTCGGATTTGCTCTAGGGGGAACACTGATTTTCATGAAAATACTGGATAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCGCTTGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTAACGACCTTTTTTGCTTACAAATACAATCTGATC
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTAATCATGAGTGGTCGCTACGAGATGCTATATCTTAGTGTTCC
TTTGGTTGCATTGGCGTACATATATGCGAATCGTTTCACAATTGCAGGCATGGGTGAGGATTTTGCGGCCAACTTGGGTG
TACATTACAAGCGCACCGTCAATGTCGGTTTGGTGATCGTGGCTTTGGTATCCTCTGTTGTCATCTTAACCGTTGGGACG
ATTCCCTTTTTAGGGCTGGTTGTACCCAATCTAGTCAGCATGTATATGGGGGATAATCTGAAAAAAAGCCTGGCCCATAC
AGCGATCTTGGGCGCCGTCTTTGTGCTGTTTTGCGACATTTTGGGACGGGTGATCATTTATCCGTATGAAATTTCTGTAG
GGCTTACGGTTGGTGTGATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.111

99.369

0.508