Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OYT09_RS12445 Genome accession   NZ_CP113973
Coordinates   2770262..2772112 (+) Length   616 a.a.
NCBI ID   WP_272640750.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain P3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2765262..2777112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OYT09_RS12420 (OYT09_12430) - 2766000..2767223 (+) 1224 WP_272640746.1 Ger(x)C family spore germination protein -
  OYT09_RS12425 (OYT09_12435) - 2767229..2767459 (+) 231 WP_272640747.1 hypothetical protein -
  OYT09_RS12430 (OYT09_12440) - 2767563..2767709 (+) 147 WP_272640748.1 hypothetical protein -
  OYT09_RS12435 (OYT09_12445) - 2768021..2768431 (+) 411 WP_013310356.1 MarR family winged helix-turn-helix transcriptional regulator -
  OYT09_RS12440 (OYT09_12450) rcrP 2768506..2770269 (+) 1764 WP_272640749.1 ABC transporter ATP-binding protein Regulator
  OYT09_RS12445 (OYT09_12455) rcrQ 2770262..2772112 (+) 1851 WP_272640750.1 ABC transporter ATP-binding protein Regulator
  OYT09_RS12450 (OYT09_12460) - 2772221..2772529 (+) 309 WP_025723019.1 hypothetical protein -
  OYT09_RS12455 (OYT09_12465) fabD 2773676..2774887 (+) 1212 WP_272640751.1 ACP S-malonyltransferase -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 67817.35 Da        Isoelectric Point: 6.2783

>NTDB_id=763885 OYT09_RS12445 WP_272640750.1 2770262..2772112(+) (rcrQ) [Paenibacillus polymyxa strain P3]
MDKNEHTVDSQQMKMNQGGPMGKGPAGGKGAGEKANNFKKTIRQLVSYSKAYVPMIVLAMVLALVGSTLNVIGPDKLSDI
ANLIQEGIVTGIDVSAVQKIVLVLALLYGFGLIFNYFQGFITATVSQRLTKKMRTELSRKIDHMPLKYFDSTSYGNVLSR
VTNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTVTGIVATLIGFCLMSVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEQAAKEVFHGINSRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCVVGALLVNQQTISIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELADERHKTTKLDTAKGDVEFKHVRFGYNADRMIIKDFSMKA
EAGQKIAIVGPTGAGKTTLVNLLMRFYELNDGEIYIDGTPISQLTRENIHELFCMVLQDTWLFEGTIRDNIVFSKDHVSD
EQVEAACRAVGLHSFIKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDSPMLILDEATSSVDTRTELLIQQAMDQLTV
GKTSFVIAHRLSTIKNADLILVMKDGDIIEMGNHEELLAKGGFYADLYNSQFEHAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=763885 OYT09_RS12445 WP_272640750.1 2770262..2772112(+) (rcrQ) [Paenibacillus polymyxa strain P3]
ATGGATAAGAATGAACACACCGTCGACAGCCAGCAAATGAAAATGAATCAGGGAGGTCCCATGGGTAAAGGCCCTGCGGG
GGGCAAGGGTGCTGGTGAAAAAGCAAATAATTTCAAAAAGACCATCAGACAGCTTGTATCCTACAGCAAGGCCTATGTGC
CTATGATTGTACTAGCTATGGTACTGGCCCTGGTCGGCTCCACCCTCAACGTGATTGGCCCGGATAAGCTCAGTGATATT
GCCAACCTGATTCAGGAAGGAATCGTAACCGGGATTGATGTAAGTGCTGTTCAGAAGATTGTTCTTGTATTGGCGCTTTT
ATATGGATTTGGTCTTATCTTTAACTATTTTCAGGGCTTCATTACAGCAACCGTCTCACAGCGTCTTACAAAGAAGATGC
GGACAGAGCTATCTCGAAAAATCGATCATATGCCTTTGAAGTATTTTGACTCTACGAGTTACGGTAATGTGCTTAGCCGC
GTAACCAACGATGTCGATACCATCGGACAAACGTTAAACAACAGTCTCGGCACGCTTGTCAGTGCGCTGGCTACCTTCGT
GGGCGCCTTGATTATGATGCTTTATACGAACTGGATCATGACCGTTACCGGAATTGTAGCTACGCTGATCGGCTTTTGCC
TGATGAGCGTGATTATGAAGCATTCACAGAAATACTTTGTAGCACAGCAAGCGGAGCTTGGCCAGATCAACGGTCATATT
GAAGAAACCTATGCTGGTCATAACGTAGTCAAGGTATATAACGGAGAACAAGCAGCCAAGGAAGTGTTTCATGGCATTAA
CAGCCGCCTATATACAAATGCATGGAAGTCCCAGTTCATGTCTGGTCTGATGATGCCAGTCATGATGTTCATTGGGAATT
TTGGTTATGTCGCGGTCTGTGTTGTGGGAGCTTTACTGGTCAACCAACAGACTATAAGCATTGGAACTATTGTCGCCTTC
ATGGTGTATATTCGACTGTTTACACAACCCTTGTCGCAGCTGGCACAGGCCGCAACCAATCTGCAATCGGCCGCCGCCGC
CAGTGAACGTGTATTTGAATTTCTGGGTGAAGAAGAATTGGCAGATGAGCGTCACAAGACCACAAAGCTGGACACCGCCA
AAGGGGATGTCGAATTCAAACATGTCCGTTTCGGCTATAATGCAGACCGTATGATTATCAAGGACTTCTCCATGAAAGCT
GAAGCTGGTCAGAAAATTGCCATTGTCGGTCCGACAGGCGCCGGTAAGACCACGCTCGTGAATTTGCTCATGCGGTTTTA
TGAGCTGAACGATGGAGAAATCTACATTGACGGAACCCCGATTAGCCAATTAACGCGTGAGAATATTCATGAATTATTCT
GTATGGTGCTTCAGGATACCTGGCTGTTCGAAGGAACGATTCGTGACAATATCGTCTTTTCCAAAGATCATGTTTCTGAT
GAGCAGGTGGAAGCTGCTTGTAGAGCGGTGGGGCTGCACAGCTTCATTAAAACACTGCCGCAGGGCTATGATACAGTGCT
GGACGACAAAGCCAATCTCTCTGCCGGTCAAAAGCAATTGATTACCATTGCAAGAGCGATGATTGAAGATTCACCCATGC
TCATTCTGGATGAGGCCACAAGCTCGGTTGATACGCGTACGGAATTGCTGATTCAACAAGCGATGGACCAGCTGACTGTG
GGGAAAACCTCCTTTGTAATTGCTCACCGACTTTCGACGATCAAGAATGCGGATCTGATTCTGGTCATGAAGGATGGTGA
CATTATCGAAATGGGTAACCATGAGGAATTGCTGGCTAAAGGCGGCTTCTATGCTGATCTATACAACAGTCAGTTTGAAC
ATGCATCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(58-331)

ABC transporter (ABC_tran)

(394-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.979

93.669

0.524