Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OYT09_RS12440 Genome accession   NZ_CP113973
Coordinates   2768506..2770269 (+) Length   587 a.a.
NCBI ID   WP_272640749.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain P3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2763506..2775269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OYT09_RS12410 (OYT09_12420) - 2764304..2764453 (-) 150 WP_167686448.1 hypothetical protein -
  OYT09_RS12415 (OYT09_12425) - 2764490..2766019 (+) 1530 WP_272640745.1 spore germination protein -
  OYT09_RS12420 (OYT09_12430) - 2766000..2767223 (+) 1224 WP_272640746.1 Ger(x)C family spore germination protein -
  OYT09_RS12425 (OYT09_12435) - 2767229..2767459 (+) 231 WP_272640747.1 hypothetical protein -
  OYT09_RS12430 (OYT09_12440) - 2767563..2767709 (+) 147 WP_272640748.1 hypothetical protein -
  OYT09_RS12435 (OYT09_12445) - 2768021..2768431 (+) 411 WP_013310356.1 MarR family winged helix-turn-helix transcriptional regulator -
  OYT09_RS12440 (OYT09_12450) rcrP 2768506..2770269 (+) 1764 WP_272640749.1 ABC transporter ATP-binding protein Regulator
  OYT09_RS12445 (OYT09_12455) rcrQ 2770262..2772112 (+) 1851 WP_272640750.1 ABC transporter ATP-binding protein Regulator
  OYT09_RS12450 (OYT09_12460) - 2772221..2772529 (+) 309 WP_025723019.1 hypothetical protein -
  OYT09_RS12455 (OYT09_12465) fabD 2773676..2774887 (+) 1212 WP_272640751.1 ACP S-malonyltransferase -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64807.18 Da        Isoelectric Point: 7.7403

>NTDB_id=763884 OYT09_RS12440 WP_272640749.1 2768506..2770269(+) (rcrP) [Paenibacillus polymyxa strain P3]
MLKIFKYLKKNEWMLVLCSLVFIVVQVWLDLKLPDYMAEITTKLQTEGTPVSELLIPGSYMLLCAVGSMIASIIVGYFAA
KVAAGLAMRLRAMVFDKTLSFSMEEMNNFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIVKIADKNWQWTAS
TGAAVAALILMLSVIVVFALPSFQRIQRLTDNLNRVTREHLIGLRVVRAYNADQYQQEKFEQANVELTNTNLFANRLMTM
IGPGMTFIMSGLSVSIYCIGAYLINGAAVLDRITLFSNMVVFSSYAMQVVMAFMMVSMIFILMPRASISAKRIMEVLNTE
SSIVNGHETTGEESVMGQVEFRNVSFKYPDAEEAVLRNISFTAKRGETVAFIGATGSGKTSVINLIPRFYDVTEGEVLVD
GVNVRNYNQQALHNKIGYVPQRAVLFNGTVVSNVSYGDNGRAGASEKLVKEAVGIAQGTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRILRSALKKETGHATTLIVGQRIGTIKDADRIIVLDQGEIVGSGT
HEELMTNCSTYQEIAYSQLSKEELIHG

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=763884 OYT09_RS12440 WP_272640749.1 2768506..2770269(+) (rcrP) [Paenibacillus polymyxa strain P3]
ATGCTAAAGATATTCAAATATCTCAAGAAAAATGAATGGATGCTCGTGCTTTGCAGCTTAGTTTTCATCGTTGTGCAGGT
ATGGCTTGATCTGAAGCTGCCTGATTATATGGCGGAAATTACGACCAAGCTGCAAACGGAAGGAACGCCTGTGTCCGAAC
TGCTGATTCCCGGCAGTTACATGTTGCTTTGTGCCGTCGGTAGTATGATTGCATCTATTATTGTGGGCTACTTCGCGGCA
AAGGTGGCTGCAGGGCTGGCTATGCGTCTGCGTGCGATGGTCTTTGACAAGACCTTATCCTTTTCGATGGAAGAGATGAA
CAACTTTTCGACGGCAAGCCTCATTACCCGCTCCACGAACGATGTTACACAGATTCAAACGGTGGTTGCGCTGGGGCTGC
AGGTGATCATCAAGGCACCGATTCTGGCCGTATGGGCCATTGTGAAGATTGCGGATAAAAACTGGCAGTGGACCGCCTCC
ACAGGAGCGGCCGTAGCTGCTCTGATTCTAATGCTAAGTGTCATTGTTGTTTTCGCTCTTCCAAGTTTCCAGAGAATCCA
GCGTCTCACCGATAATCTGAACAGGGTAACACGTGAGCATCTGATCGGACTTCGGGTAGTACGCGCTTATAATGCAGATC
AGTATCAGCAGGAGAAGTTCGAGCAGGCTAACGTTGAGTTGACGAATACAAACCTGTTTGCAAACCGATTAATGACGATG
ATTGGCCCAGGTATGACCTTTATTATGTCAGGTCTGAGCGTCTCTATCTATTGTATCGGCGCTTACCTGATTAACGGGGC
GGCCGTACTAGACCGTATCACGTTGTTCTCCAATATGGTCGTATTCTCCTCTTATGCAATGCAGGTGGTTATGGCCTTTA
TGATGGTAAGTATGATATTCATTCTGATGCCTCGCGCCTCGATTTCTGCCAAACGGATCATGGAGGTTTTGAATACCGAA
TCCAGCATCGTTAACGGGCATGAGACGACTGGAGAAGAGAGCGTTATGGGGCAAGTGGAATTCCGTAATGTCAGCTTCAA
ATATCCGGACGCGGAGGAGGCCGTGCTTCGCAACATTAGCTTTACGGCGAAACGAGGCGAGACGGTTGCCTTTATTGGCG
CTACAGGCAGCGGCAAAACCAGCGTGATCAATCTGATTCCCCGTTTCTATGATGTGACCGAGGGAGAGGTGCTCGTGGAC
GGTGTGAATGTCAGGAACTATAATCAGCAGGCACTCCATAACAAAATCGGGTATGTTCCCCAGAGAGCTGTACTGTTCAA
CGGTACGGTGGTATCCAACGTTTCGTACGGTGATAACGGAAGAGCAGGAGCTTCGGAAAAACTTGTCAAAGAAGCCGTTG
GTATTGCTCAAGGAACGGAGTTTGTCGAAAAAATGGATGGTCAATATCAGGGTAGAATTTCGCAAGGTGGAGCGAACGTG
TCCGGTGGTCAAAAGCAGCGGCTGTCCATTGCGCGTGCCATCTACCGTCAGCCGGAAATTTATATTTTCGATGATTCCTT
CTCGGCACTAGACTACAGAACAGACCGGATTCTGCGCTCCGCTCTCAAAAAAGAAACCGGCCATGCTACGACACTTATCG
TTGGTCAGCGCATAGGTACGATCAAAGACGCTGATCGGATTATCGTGCTGGACCAGGGAGAGATTGTAGGGAGCGGCACG
CATGAAGAGCTGATGACGAACTGCAGCACCTATCAGGAGATCGCATATTCGCAGCTTTCGAAGGAGGAACTCATACATGG
ATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.254

100

0.533