Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   OIY87_RS11500 Genome accession   NZ_CP113954
Coordinates   2301113..2301826 (+) Length   237 a.a.
NCBI ID   WP_009855151.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain XH2168     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2296113..2306826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIY87_RS11490 (OIY87_00835) treC 2297297..2298928 (-) 1632 WP_269725023.1 alpha,alpha-phosphotrehalase -
  OIY87_RS11495 (OIY87_00840) treP 2298943..2300916 (-) 1974 WP_269725024.1 PTS system trehalose-specific EIIBC component -
  OIY87_RS11500 (OIY87_00845) treR 2301113..2301826 (+) 714 WP_009855151.1 trehalose operon repressor Regulator
  OIY87_RS11505 (OIY87_00850) - 2302125..2302952 (-) 828 WP_269725025.1 class C sortase -
  OIY87_RS11510 (OIY87_00855) - 2303140..2304645 (-) 1506 WP_269725026.1 SpaH/EbpB family LPXTG-anchored major pilin -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27418.41 Da        Isoelectric Point: 7.3315

>NTDB_id=763851 OIY87_RS11500 WP_009855151.1 2301113..2301826(+) (treR) [Streptococcus gallolyticus strain XH2168]
MKKYEQIFKELEHDITSGIYQAGDYLPTENELTQTYHMSRDTIRKALSLLAEAGLIQKIHGSGSQVIKHEQIDFPVSQLT
SYKELVDAHHINSKTNVIAIDKLIVDEKLAALTGFKKNNLVWRIIRQRVVDGTASVLDIDYLDKKIVPNMTREIAEQSIY
DYLENQLHLIIAYAQKEITIDQLTDRDKLLLDIGAEHHVVSVKSKVYLANKHQFQFTESRHKLEKFRFVDFATRKPQ

Nucleotide


Download         Length: 714 bp        

>NTDB_id=763851 OIY87_RS11500 WP_009855151.1 2301113..2301826(+) (treR) [Streptococcus gallolyticus strain XH2168]
ATGAAAAAATACGAACAAATCTTTAAAGAACTTGAACACGATATCACCTCTGGCATTTACCAAGCAGGTGACTATCTCCC
CACCGAAAACGAGCTAACCCAGACCTACCACATGAGCCGTGACACTATCCGCAAAGCGCTTAGTCTCCTTGCTGAAGCAG
GGCTTATCCAGAAAATTCACGGTTCTGGCTCTCAAGTCATCAAGCACGAGCAGATTGATTTTCCCGTTTCACAGCTCACA
AGCTATAAAGAGCTGGTCGACGCTCACCATATCAATTCCAAAACCAATGTCATTGCCATTGATAAACTTATCGTTGATGA
AAAATTAGCTGCGCTGACAGGTTTCAAGAAAAATAACCTTGTCTGGCGAATCATTCGCCAACGTGTCGTTGACGGCACCG
CTTCTGTCCTTGACATTGATTATTTAGACAAAAAAATCGTGCCAAATATGACACGAGAAATCGCCGAACAATCCATTTAC
GATTACCTTGAAAACCAACTCCACCTCATCATCGCTTACGCTCAAAAAGAAATCACCATTGACCAGCTAACTGACCGTGA
CAAACTACTCCTTGACATCGGTGCCGAACACCACGTCGTCTCTGTCAAATCAAAAGTTTACCTCGCCAACAAACACCAAT
TCCAATTCACCGAAAGCAGACACAAACTCGAAAAATTCCGCTTCGTTGACTTCGCAACCCGAAAACCACAGTAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(91-227)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

72.222

98.734

0.713