Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OIY87_RS10810 Genome accession   NZ_CP113954
Coordinates   2160265..2161626 (-) Length   453 a.a.
NCBI ID   WP_043878614.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain XH2168     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2155265..2166626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIY87_RS10785 (OIY87_00130) - 2155727..2155906 (-) 180 WP_074658284.1 potassium transporter Trk -
  OIY87_RS10790 (OIY87_00135) - 2156067..2157233 (-) 1167 WP_268729428.1 CynX/NimT family MFS transporter -
  OIY87_RS10795 (OIY87_00140) gltX 2157408..2158865 (-) 1458 WP_269725000.1 glutamate--tRNA ligase -
  OIY87_RS10800 (OIY87_00145) - 2159050..2159544 (-) 495 WP_061458128.1 LURP-one-related/scramblase family protein -
  OIY87_RS10805 (OIY87_00150) - 2159647..2160141 (-) 495 WP_003066696.1 beta-class carbonic anhydrase -
  OIY87_RS10810 (OIY87_00155) radA 2160265..2161626 (-) 1362 WP_043878614.1 DNA repair protein RadA Machinery gene
  OIY87_RS10815 (OIY87_00160) - 2161644..2162177 (-) 534 WP_061458130.1 histidine phosphatase family protein -
  OIY87_RS10820 (OIY87_00165) - 2162208..2162654 (-) 447 WP_012962568.1 dUTP diphosphatase -
  OIY87_RS10825 (OIY87_00170) - 2162712..2163977 (-) 1266 WP_269725001.1 MFS transporter -
  OIY87_RS10830 (OIY87_00175) - 2163993..2165195 (-) 1203 WP_269725002.1 MFS transporter -
  OIY87_RS10835 (OIY87_00180) - 2165360..2166127 (-) 768 WP_009855078.1 epoxyqueuosine reductase QueH -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49440.72 Da        Isoelectric Point: 6.0243

>NTDB_id=763849 OIY87_RS10810 WP_043878614.1 2160265..2161626(-) (radA) [Streptococcus gallolyticus strain XH2168]
MAKKKTTFICQECGYHSPKYLGRCPNCSSWTSFVEEVEVQEVKNARVSLTGEKSKPTKLKDVSSIHYSRTKTGMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRAQIE
QIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKVYAPKNSLSGIDIPDNIQVIGVTTVGEVLKQVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=763849 OIY87_RS10810 WP_043878614.1 2160265..2161626(-) (radA) [Streptococcus gallolyticus strain XH2168]
ATCGCTAAGAAAAAAACAACATTTATTTGTCAGGAGTGTGGCTATCATTCTCCGAAATATTTGGGACGTTGTCCGAATTG
TTCGTCTTGGACGTCTTTTGTTGAAGAAGTTGAGGTGCAAGAAGTCAAAAATGCGCGTGTTAGTTTGACGGGTGAAAAGA
GTAAACCGACTAAGTTAAAGGATGTTAGCTCGATTCATTATTCACGCACGAAGACTGGCATGGATGAATTTAACCGCGTG
CTTGGTGGCGGTGTGGTGCCAGGTAGTTTGGTGCTTATCGGTGGTGACCCAGGTATCGGAAAATCAACGCTTCTTTTGCA
GGTATCTATTCAACTTGCAGATAAGGGAACGGTTCTTTACGTTTCTGGGGAAGAATCAGCAGAGCAGATTAAACTACGTA
GTGAGCGTCTTGGCGACATTGACAATGAATTTTACCTTTATGCTGAAACGAATATGCAAGCCATTCGCGCACAGATTGAG
CAAATTCAGCCTGATTTCTTGATTATTGACTCGATTCAGACCATTATGAGCCCTGATATTTCTGGGGTTCAAGGGTCGGT
ATCACAAGTACGTGAAGTGACTGCAGAGTTGATGCAACTGGCTAAGACAAATAATATTGCAACCTTTATCGTTGGTCACG
TGACTAAGGAAGGGCAGCTTGCAGGACCGCGCATGCTTGAGCATATGGTGGATACGGTGCTTTATTTTGAAGGGGAACGT
CATCACACCTTCCGTATTTTACGTGCTGTGAAAAATCGTTTTGGTTCAACTAACGAAATCGGCATTTTTGAAATGCAATC
TGGTGGTCTTGTTGAAGTGCTTAATCCGAGCCAAGTTTTCTTAGAAGAACGTTTGGACGGTGCAACGGGGTCAGCTATCG
TGGTTACCATGGAAGGTAGCCGTCCAATTTTGGCGGAAGTCCAAGCTTTGGTAACGCCGACAGTCTTTGGAAATGCTAAA
CGCACCACGACAGGACTGGATTTTAACCGTGTTAGCCTTATTATGGCGGTGCTTGAAAAACGTTGTGGACTTTTATTGCA
AAATCAAGATGCTTATTTGAAATCGGCTGGTGGTGTTAAACTTGATGAGCCAGCGATTGATTTGGCAGTAGCGGTAGCCA
TTGCGTCAAGCTATAAAGAAAAGCCAACAAATCCACAGGAAGCCTTCATCGGTGAAATTGGTTTGACAGGCGAAATTCGT
CGTGTGACACGTATTGAGCAACGTATCAACGAAGCAGCAAAACTTGGTTTTACCAAAGTTTATGCTCCTAAAAACTCACT
GTCAGGTATTGATATTCCAGACAATATTCAAGTCATTGGTGTGACAACTGTGGGCGAAGTCCTCAAACAAGTTTTTGCGT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(72-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.521

100

0.885
  radA Streptococcus pneumoniae D39

88.521

100

0.885
  radA Streptococcus pneumoniae R6

88.521

100

0.885
  radA Streptococcus pneumoniae TIGR4

88.521

100

0.885
  radA Streptococcus mitis SK321

88.521

100

0.885
  radA Streptococcus mitis NCTC 12261

88.3

100

0.883
  radA Bacillus subtilis subsp. subtilis str. 168

62.031

100

0.62