Detailed information NTG0763829

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: OIY87_RS07050
• Genome accession: NZ_CP113954
• Coordinates: 1396072..1398180 (+)
• Length: 702 a.a.
• NCBI ID: WP_269724841.1
• Uniprot ID: -
• Organism: Streptococcus gallolyticus strain XH2168
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1391072..1403180

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OIY87_RS07025 (OIY87_08340)	-	1392717..1393253 (-)	537	Protein_1325	DNA cytosine methyltransferase	-
OIY87_RS07030 (OIY87_08345)	-	1393403..1394221 (-)	819	WP_044720888.1	replication initiator protein A	-
OIY87_RS07035 (OIY87_08350)	-	1394218..1394391 (-)	174	WP_044720886.1	hypothetical protein	-
OIY87_RS07040 (OIY87_08355)	rplL	1394591..1394959 (-)	369	WP_009854351.1	50S ribosomal protein L7/L12	-
OIY87_RS07045 (OIY87_08360)	rplJ	1395028..1395531 (-)	504	WP_009854352.1	50S ribosomal protein L10	-
OIY87_RS07050 (OIY87_08365)	clpC	1396072..1398180 (+)	2109	WP_269724841.1	AAA family ATPase	Regulator
OIY87_RS07055 (OIY87_08370)	-	1398287..1398934 (+)	648	WP_013643160.1	endonuclease III domain-containing protein	-
OIY87_RS07060 (OIY87_08375)	-	1399043..1399711 (+)	669	WP_039694591.1	YoaK family protein	-
OIY87_RS07065 (OIY87_08380)	mmuM	1399751..1400701 (-)	951	WP_013643161.1	homocysteine S-methyltransferase	-
OIY87_RS07070 (OIY87_08385)	-	1400714..1402090 (-)	1377	WP_269724842.1	amino acid permease	-
OIY87_RS07075 (OIY87_08390)	yihA	1402389..1402982 (-)	594	WP_012962046.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-

Sequence

Protein

• Length: 702 a.a.
• Molecular weight: 77224.99 Da
• Isoelectric Point: 4.7283

>NTDB_id=763829 OIY87_RS07050 WP_269724841.1 1396072..1398180(+) (clpC) [Streptococcus gallolyticus strain XH2168]
MANNNFYGRDPFGNMDDIFNELMGNMGGYNSENRRYLINGREVTPEEFAQYRQTGKLPGNAEYQEGAPTSAPKEDGILAK
LGTNLTERARANELDPVIGRNKEIQETAEILSRRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDIS
GLEAGTQYRGAFEENIQNLVKEVKDAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRN
TILKNAALARRFNEVKVNAPSAQDSFNILMGIRDLYEKHHNVILPDNVLKAAVDFSIQYIPQRSLPDKAIDLIDMTAAHL
AAQHPATDVKSLEKEIADQKEKQENAVAKEDYEAALNAKVRIEELQKQIDNHTEGQKVTATVNDVAESVERLTGVPVSNM
GASDIERLKELASRLKGKVIGQDEAVEAVSRAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDMFGSKDAIIR
LDMSEYSDRTAVSKLIGTTAGYVGYDDNSNTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTINFK
NTVIIATSNAGFGNEALTGQDDKDKKIMDRIAPYFRPEFLNRFNGIIEFSHLTKEDLNDIVDLMLDEVSKTIAKKGIDLV
ISDAAKQHLIEEGYDEAMGVRPLRRVIEQEIRDKITDFYLDHTDVKHLKADMVDGELVISEK

Nucleotide

• Length: 2109 bp

>NTDB_id=763829 OIY87_RS07050 WP_269724841.1 1396072..1398180(+) (clpC) [Streptococcus gallolyticus strain XH2168]
ATGGCAAATAATAATTTTTACGGAAGAGATCCTTTTGGAAATATGGATGACATTTTTAATGAACTTATGGGTAACATGGG
CGGGTACAATTCAGAAAACAGACGCTATTTGATTAATGGGCGCGAAGTTACTCCTGAAGAATTTGCACAATATCGCCAAA
CAGGTAAGCTCCCTGGAAACGCGGAATACCAAGAAGGTGCGCCTACTTCTGCTCCTAAAGAAGATGGTATCTTGGCAAAA
TTAGGAACAAACTTGACCGAACGCGCACGCGCTAACGAACTCGACCCTGTTATTGGACGTAACAAAGAAATCCAAGAAAC
TGCTGAAATCTTGTCACGTCGTACCAAAAACAATCCTGTCCTTGTTGGGGATGCAGGTGTTGGTAAAACAGCCGTTGTCG
AAGGCTTAGCGCAAGCTATTGTCAATGGTGATGTGCCAGCAGCTATCAAAAATAAAGAAATTATTTCTATTGATATTTCT
GGTCTTGAAGCTGGCACACAATATCGTGGTGCTTTTGAAGAAAATATCCAAAACCTTGTCAAAGAAGTTAAAGACGCTGG
TAATATCATTCTCTTCTTTGATGAAATCCACCAAATTTTAGGCGCAGGGTCAACTGGTGGCGACTCTGGTTCGAAAGGCT
TAGCTGACATTCTCAAACCTGCACTTTCTCGTGGCGAATTGACCGTTATCGGTGCAACAACTCAAGACGAATATCGTAAT
ACTATTTTGAAGAATGCTGCGCTCGCTCGCCGTTTCAACGAAGTCAAAGTAAATGCTCCTTCTGCTCAAGATAGCTTTAA
TATTTTAATGGGAATTCGTGATTTATATGAAAAACACCACAACGTTATTCTCCCTGATAATGTGTTAAAAGCTGCTGTTG
ATTTTTCAATTCAATATATCCCACAACGTAGTTTACCAGATAAAGCTATTGACTTGATTGATATGACTGCTGCTCATTTG
GCTGCTCAACACCCTGCAACTGATGTCAAATCTCTTGAAAAGGAAATTGCAGACCAAAAAGAAAAACAAGAAAATGCTGT
GGCTAAAGAAGATTACGAAGCAGCTCTCAATGCCAAAGTTCGTATCGAAGAATTGCAAAAACAAATTGACAACCATACGG
AAGGGCAAAAAGTTACAGCTACCGTTAATGATGTGGCAGAATCTGTCGAACGATTAACTGGTGTTCCCGTGTCAAATATG
GGGGCAAGTGATATTGAACGCTTGAAAGAATTAGCTAGCCGTTTGAAAGGTAAAGTCATCGGACAAGATGAGGCTGTTGA
AGCTGTCTCACGTGCCATTCGTCGTAACCGTGCTGGTTTTGACGAAGGTAATCGACCAATTGGTAGTTTCCTCTTTGTCG
GTCCTACTGGCGTTGGTAAGACAGAGCTTGCTAAACAATTAGCCCTTGATATGTTCGGCTCAAAAGATGCTATTATCCGC
CTTGACATGTCTGAATACTCTGATCGTACAGCTGTTTCTAAATTAATCGGTACAACTGCTGGCTATGTTGGCTACGACGA
CAATAGCAACACGCTTACTGAACGTGTTCGTCGTAACCCATACTCAATTGTTCTTCTTGATGAAATTGAAAAAGCTGACC
CTCAAGTCATCACACTTCTTCTCCAAGTTTTGGATGATGGTCGTTTGACAGACGGTCAAGGTAATACGATTAACTTTAAG
AATACCGTCATCATTGCTACCTCTAATGCTGGATTCGGCAACGAAGCTTTGACTGGTCAAGATGATAAAGATAAGAAAAT
TATGGATCGTATCGCTCCATACTTCCGCCCAGAATTTCTTAACCGTTTCAACGGTATTATCGAATTCTCTCACTTGACTA
AAGAAGATTTGAACGACATTGTTGACTTAATGCTTGACGAAGTTAGCAAGACCATTGCCAAGAAAGGCATTGATTTGGTG
ATTAGTGATGCTGCTAAACAACACCTTATCGAAGAAGGTTATGATGAAGCCATGGGTGTTCGACCACTCCGCCGTGTCAT
TGAACAAGAAATCCGCGATAAAATCACTGATTTCTATCTTGATCACACAGATGTTAAACACCTTAAAGCTGACATGGTTG
ACGGAGAACTAGTCATCAGCGAAAAATAA

Domains

Predicted by InterproScan.

• AAA lid domain (AAA_lid_9) (262-355)

• ATPase family associated with various cellular activities (AAA) (AAA) (120-252)

• AAA domain (Cdc48 subfamily) (AAA_2) (445-604)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (612-683)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	48.784	99.573	0.486
clpE	Streptococcus mutans UA159	49.294	90.741	0.447
clpE	Streptococcus pneumoniae Rx1	48.438	91.168	0.442
clpE	Streptococcus pneumoniae D39	48.438	91.168	0.442
clpE	Streptococcus pneumoniae R6	48.438	91.168	0.442
clpE	Streptococcus pneumoniae TIGR4	48.504	90.456	0.439
clpC	Bacillus subtilis subsp. subtilis str. 168	45.127	95.014	0.429
clpC	Streptococcus pneumoniae Rx1	43.76	90.171	0.395
clpC	Streptococcus pneumoniae D39	43.76	90.171	0.395
clpC	Streptococcus pneumoniae TIGR4	43.81	89.744	0.393
clpC	Streptococcus thermophilus LMD-9	43.387	88.319	0.383
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.457	88.177	0.383
clpC	Streptococcus thermophilus LMG 18311	43.204	88.034	0.38
clpC	Streptococcus mutans UA159	42.697	88.746	0.379