Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   OIY87_RS03620 Genome accession   NZ_CP113954
Coordinates   669876..671678 (+) Length   600 a.a.
NCBI ID   WP_234756052.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain XH2168     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 664876..676678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIY87_RS03595 (OIY87_04900) queA 665533..666561 (-) 1029 WP_077496506.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  OIY87_RS03600 (OIY87_04905) - 666737..667237 (+) 501 WP_012961668.1 VIT1/CCC1 transporter family protein -
  OIY87_RS03605 (OIY87_04910) nagB 667365..668069 (+) 705 WP_012961669.1 glucosamine-6-phosphate deaminase -
  OIY87_RS03610 (OIY87_04915) - 668145..668861 (+) 717 WP_061458983.1 pseudouridine synthase -
  OIY87_RS03615 (OIY87_04920) - 668915..669886 (+) 972 WP_234756054.1 competence protein CoiA -
  OIY87_RS03620 (OIY87_04925) pepF 669876..671678 (+) 1803 WP_234756052.1 oligoendopeptidase F Regulator
  OIY87_RS03625 (OIY87_04930) - 671752..672270 (+) 519 WP_009853778.1 GNAT family N-acetyltransferase -
  OIY87_RS03630 (OIY87_04935) - 672292..672903 (+) 612 WP_234756050.1 HAD-IA family hydrolase -
  OIY87_RS03635 (OIY87_04940) - 672957..673658 (+) 702 WP_009853780.1 O-methyltransferase -
  OIY87_RS03640 (OIY87_04945) - 673727..674833 (+) 1107 WP_009853781.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68902.84 Da        Isoelectric Point: 4.5967

>NTDB_id=763822 OIY87_RS03620 WP_234756052.1 669876..671678(+) (pepF) [Streptococcus gallolyticus strain XH2168]
MSDNRSHIDEKYQWDLSTVFATDDAWEAELASLDSDLENAKAYKGHLTASSNDLLAITESYLALSRRLEKLYVYASMKND
QDTTVAKYQEYQAKATAIYAKFSEIFAFYEPELMQLSKESFEDFVAETPALSAYAHFFEQLFKRQPHVLSQAEEELLAGA
QEIFGAAGETFGILDNADIIFPIVLDDEGKEIQLTHGNFISLLESKNRDVRKEAYQALYATYEQFQHTYAKTLQTNVKVH
NYEARVHHFKSAREAALSANFIPESVYDTLIETVNANLPLLHRYVELRKKILKLDDLRMYDIHTPLSEMDMSFTYEEALA
KAEDVLAVFGKEYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLKEVDDDKARFAILNHYLDGFKSTIFRQAQFAEFEDIIHKADQAGEVLTSDY
LNQLYADLNEKYYGLSKADNPEIQYEWARIPHFYYNYYVYQYATGFAAASYLADKVVHGTQADIDRYLDYLKAGNSDYPL
NVIKKAGVDMTTSAYLDAAFRIFEERLDELEALIEKGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=763822 OIY87_RS03620 WP_234756052.1 669876..671678(+) (pepF) [Streptococcus gallolyticus strain XH2168]
ATGTCAGATAATCGTAGTCATATTGATGAAAAATACCAATGGGATTTAAGCACAGTTTTTGCCACAGATGATGCTTGGGA
AGCGGAGCTGGCTAGTCTTGATAGTGATTTAGAAAATGCTAAAGCTTACAAAGGGCATTTGACAGCGTCAAGTAATGATT
TGCTTGCTATTACGGAAAGTTACCTTGCCTTGTCGCGTCGTTTGGAGAAGCTTTATGTTTATGCTTCAATGAAAAACGAC
CAAGATACAACAGTAGCCAAATACCAAGAATACCAAGCTAAAGCAACAGCAATCTATGCCAAATTTAGTGAAATTTTTGC
TTTTTACGAACCTGAATTGATGCAATTGTCTAAAGAATCTTTTGAGGATTTCGTGGCAGAAACACCAGCTTTATCTGCTT
ATGCACATTTCTTTGAGCAGCTTTTCAAACGTCAACCGCATGTTTTGTCACAGGCTGAGGAAGAATTGTTAGCAGGTGCG
CAAGAAATTTTTGGAGCTGCAGGAGAAACATTTGGGATTTTGGATAATGCTGACATCATTTTTCCAATCGTTCTAGACGA
TGAGGGCAAAGAAATTCAGCTAACGCATGGTAATTTCATTAGCTTGTTAGAATCAAAAAATCGTGATGTCCGCAAAGAAG
CTTACCAAGCTTTGTATGCAACTTATGAACAATTCCAACACACTTATGCGAAAACCTTGCAAACCAATGTCAAAGTGCAT
AACTATGAAGCGCGTGTTCATCATTTTAAATCAGCACGTGAGGCAGCACTTTCGGCTAATTTTATTCCAGAATCTGTTTA
TGATACCTTGATTGAAACGGTCAATGCTAACCTGCCTTTGCTTCATCGCTACGTGGAACTTCGCAAGAAAATCCTTAAAC
TGGATGATTTGAGAATGTACGATATTCATACGCCACTTTCTGAAATGGATATGAGTTTTACCTATGAAGAAGCTTTGGCA
AAAGCTGAAGATGTCTTGGCTGTTTTTGGCAAAGAATATTCTGAGCGTGTTCATCGTGCTTTTACAGAACGCTGGATTGA
CGTCCATGTCAATAAAGGCAAACGCTCTGGTGCCTACTCTGGTGGTTCGTATGATACCAATGCTTTCATGCTGTTAAATT
GGCAAGATACCTTGGATAATTTGTTTACCTTAGTTCACGAAACGGGGCACAGCTTGCATTCGACATTTACACGTGAAAAT
CAACCCTATGTTTATGGAGATTATAGTATTTTCTTGGCAGAAATTGCTTCAACAACTAATGAAAATATTTTGACAGAGAC
ACTTTTGAAAGAAGTTGATGATGACAAAGCACGCTTTGCAATTTTGAATCATTATCTTGATGGCTTCAAGAGCACCATTT
TCCGTCAAGCACAATTTGCGGAATTTGAAGATATCATTCATAAGGCAGACCAAGCTGGAGAAGTGTTGACGAGTGATTAC
CTCAACCAACTTTATGCCGACTTAAACGAGAAATATTATGGACTCAGCAAAGCAGACAACCCAGAAATCCAATACGAATG
GGCACGCATTCCGCATTTCTACTACAATTACTATGTTTACCAATACGCCACAGGATTTGCGGCAGCTAGTTATTTAGCTG
ATAAGGTTGTTCACGGTACACAAGCGGATATTGACCGCTACCTTGATTATCTGAAAGCAGGTAATTCTGATTATCCGCTT
AATGTGATCAAAAAAGCTGGTGTGGATATGACAACAAGTGCTTATCTAGACGCTGCTTTCCGAATTTTCGAGGAACGCTT
GGATGAGTTGGAAGCTTTAATTGAAAAAGGAGCACATCTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

70.333

100

0.703