Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   QMZ13_RS00575 Genome accession   NZ_CP125741
Coordinates   99062..99445 (+) Length   127 a.a.
NCBI ID   WP_042635825.1    Uniprot ID   -
Organism   Campylobacter jejuni strain MS2212     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 94062..104445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMZ13_RS00555 (QMZ13_00555) - 94141..96075 (-) 1935 WP_002870085.1 RNB domain-containing ribonuclease -
  QMZ13_RS00560 (QMZ13_00560) ilvC 96194..97216 (+) 1023 WP_002870086.1 ketol-acid reductoisomerase -
  QMZ13_RS00565 (QMZ13_00565) - 97220..98302 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  QMZ13_RS00570 (QMZ13_00570) dprA 98292..99065 (+) 774 WP_002870087.1 DNA-processing protein DprA Machinery gene
  QMZ13_RS00575 (QMZ13_00575) dprB 99062..99445 (+) 384 WP_042635825.1 Holliday junction resolvase RuvX Machinery gene
  QMZ13_RS00580 (QMZ13_00580) - 99474..100313 (+) 840 WP_079264558.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  QMZ13_RS00585 (QMZ13_00585) msrA 100488..100985 (-) 498 WP_042635826.1 peptide-methionine (S)-S-oxide reductase MsrA -
  QMZ13_RS00590 (QMZ13_00590) ppa 101026..101544 (-) 519 WP_002870091.1 inorganic diphosphatase -
  QMZ13_RS00595 (QMZ13_00595) adk 101554..102132 (-) 579 WP_002855137.1 adenylate kinase -
  QMZ13_RS00600 (QMZ13_00600) aspS 102129..103880 (-) 1752 WP_002870092.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14174.69 Da        Isoelectric Point: 9.0848

>NTDB_id=763773 QMZ13_RS00575 WP_042635825.1 99062..99445(+) (dprB) [Campylobacter jejuni strain MS2212]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGIANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=763773 QMZ13_RS00575 WP_042635825.1 99062..99445(+) (dprB) [Campylobacter jejuni strain MS2212]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGTATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGAATACGGCATAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGACTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

45.669

100

0.457