Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   QMZ10_RS04230 Genome accession   NZ_CP125739
Coordinates   797745..798611 (+) Length   288 a.a.
NCBI ID   WP_002858085.1    Uniprot ID   -
Organism   Campylobacter jejuni strain MS2202     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 792745..803611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMZ10_RS04205 (QMZ10_04210) - 793180..794439 (-) 1260 WP_002867371.1 ComEC/Rec2 family competence protein -
  QMZ10_RS04210 (QMZ10_04215) - 794439..794996 (-) 558 WP_410494903.1 DedA family protein -
  QMZ10_RS04215 (QMZ10_04220) rny 795005..796558 (-) 1554 WP_002869639.1 ribonuclease Y -
  QMZ10_RS04220 (QMZ10_04225) - 796479..797105 (-) 627 WP_002875342.1 5-formyltetrahydrofolate cyclo-ligase -
  QMZ10_RS04225 (QMZ10_04230) - 797188..797745 (+) 558 WP_002858112.1 TlpA family protein disulfide reductase -
  QMZ10_RS04230 (QMZ10_04235) pilA 797745..798611 (+) 867 WP_002858085.1 signal recognition particle-docking protein FtsY Machinery gene
  QMZ10_RS04235 (QMZ10_04240) radA 798611..799951 (+) 1341 WP_002858434.1 DNA repair protein RadA Machinery gene
  QMZ10_RS04240 (QMZ10_04245) atpB 800020..800700 (+) 681 WP_002858390.1 F0F1 ATP synthase subunit A -
  QMZ10_RS04245 (QMZ10_04250) - 800697..800888 (+) 192 WP_002852856.1 membrane protein -
  QMZ10_RS04250 (QMZ10_04255) metF 800910..801758 (-) 849 WP_002858469.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32022.00 Da        Isoelectric Point: 5.5179

>NTDB_id=763749 QMZ10_RS04230 WP_002858085.1 797745..798611(+) (pilA) [Campylobacter jejuni strain MS2202]
MFNFFKKGLAKTLENIVGVKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=763749 QMZ10_RS04230 WP_002858085.1 797745..798611(+) (pilA) [Campylobacter jejuni strain MS2202]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGAGTTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAGCTTGCTTATTTATA
CAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAGCAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCTCATGAGCT
TGAAAAAATTGTAAGAATTTCAAACAAAGCTTTAGAAGGCGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTACAAGAATTTAATGCAAGTGCTTATTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.584

100

0.437