Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   OZX59_RS04595 Genome accession   NZ_CP113943
Coordinates   948511..950316 (+) Length   601 a.a.
NCBI ID   WP_277126965.1    Uniprot ID   -
Organism   Lactobacillus sp. ESL0681     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 943511..955316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX59_RS04565 (OZX59_04565) - 943588..944037 (-) 450 WP_277126959.1 DUF3290 domain-containing protein -
  OZX59_RS04570 (OZX59_04570) - 944141..944881 (-) 741 WP_277126960.1 PAS domain-containing protein -
  OZX59_RS04575 (OZX59_04575) - 944976..945539 (-) 564 WP_277126961.1 hypothetical protein -
  OZX59_RS04580 (OZX59_04580) - 945794..946708 (+) 915 WP_277126962.1 proline-specific peptidase family protein -
  OZX59_RS04585 (OZX59_04585) - 946760..947131 (-) 372 WP_277126963.1 hypothetical protein -
  OZX59_RS04590 (OZX59_04590) - 947152..948351 (-) 1200 WP_277126964.1 LCP family protein -
  OZX59_RS04595 (OZX59_04595) pepF 948511..950316 (+) 1806 WP_277126965.1 oligoendopeptidase F Regulator
  OZX59_RS04600 (OZX59_04600) - 950389..950817 (-) 429 WP_277124732.1 hypothetical protein -
  OZX59_RS04605 (OZX59_04605) - 951010..951909 (-) 900 WP_277124733.1 alpha/beta hydrolase -
  OZX59_RS04610 (OZX59_04610) - 951906..952445 (-) 540 WP_277124735.1 NAD(P)H-dependent oxidoreductase -
  OZX59_RS04615 (OZX59_04615) - 952461..953207 (-) 747 WP_277124736.1 SDR family oxidoreductase -
  OZX59_RS04620 (OZX59_04620) - 953197..954378 (-) 1182 WP_277126988.1 MalY/PatB family protein -
  OZX59_RS04625 (OZX59_04625) - 954388..955233 (-) 846 WP_277124738.1 DUF3737 family protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68246.94 Da        Isoelectric Point: 4.5508

>NTDB_id=763678 OZX59_RS04595 WP_277126965.1 948511..950316(+) (pepF) [Lactobacillus sp. ESL0681]
MTIPTRDQVEDNLKWDLTRVFKSDQDWEDEYTIVKQEIQTLTSLQAEFTQTATNLFTSLSKILTVERRLEKLYVYASMSS
DVDTSNAHYLGYVAQSQTLISQFEAATSFIKPAILALPADTLTNFKTSEPKLKQLDHWLEQITRLRPHTLSANEEKLIAD
TGDAMGVSENTFNVLTNSDLEYGYVQNENGEMVQLSDGLYDTLIQSQDRQVRRGAFETMYATYGQFENSLASTLSGVVKA
HNFTAQVHHYDSARDAALDENGVPTIVYDTLIQEVNNHLDLLHSYVALRKQILGLKDLQMWDMYVPLTGKPALSYTFTQA
KTAAKKALAPLGQDYLKQVDYIFDNRVIDVVESQNKVTGAYSGGSYDTDAYELLNWTDNIDSLYTLVHETGHSVHSMYTR
KNQPYVYGDYPIFVAEIASTTNENILTEYLLDHVTDPKTRAFVLNYYLDSFKGTLFRQTEFAEFEQYIHEQDANGNPLTA
DKLDKFYGQLNQHYYGDSVAPGGEIAKEWSRIPHFYYDFYVYQYATGFAAATALANKVVHGTDQDRAAYLDFLKAGSSAA
PTDIMQHAGVDMTKPDYLEDAFTTFAKRLDEFTEIVQHDFK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=763678 OZX59_RS04595 WP_277126965.1 948511..950316(+) (pepF) [Lactobacillus sp. ESL0681]
ATGACCATTCCAACAAGAGATCAAGTTGAAGATAACTTAAAGTGGGATTTAACCCGCGTCTTCAAGTCCGACCAAGACTG
GGAAGATGAATATACAATAGTTAAACAGGAAATACAAACCTTAACTAGTTTACAGGCAGAATTTACCCAAACTGCTACCA
ATTTATTTACCAGCTTAAGTAAAATTTTAACTGTTGAACGTAGATTAGAAAAGCTCTATGTCTATGCTTCAATGTCCAGC
GATGTTGATACGAGTAATGCTCATTATTTAGGTTATGTCGCCCAAAGCCAAACTTTAATTAGCCAATTTGAAGCCGCTAC
TTCTTTCATTAAACCTGCTATCTTAGCGCTGCCGGCAGATACACTCACTAATTTTAAAACTAGTGAACCTAAATTAAAAC
AGCTTGACCATTGGCTAGAGCAAATTACCCGTCTGCGGCCGCACACCTTGTCTGCAAACGAGGAAAAGTTAATCGCAGAT
ACCGGTGATGCGATGGGTGTCTCTGAAAATACTTTTAACGTCTTGACTAATTCAGATTTAGAATATGGCTACGTTCAAAA
TGAGAACGGCGAAATGGTGCAATTATCTGATGGCCTTTATGATACTTTAATTCAGTCTCAAGATCGGCAAGTTAGACGCG
GCGCTTTTGAAACAATGTATGCCACTTATGGTCAGTTTGAAAATTCACTCGCCTCAACGCTAAGCGGTGTAGTTAAAGCA
CACAATTTTACTGCTCAAGTTCACCATTACGACAGTGCTCGTGACGCAGCTCTAGATGAAAATGGCGTGCCGACTATCGT
ATACGACACCCTAATTCAAGAGGTTAATAACCACTTGGACTTACTGCACAGTTACGTTGCCTTACGCAAACAAATCTTAG
GGCTTAAAGATTTACAAATGTGGGACATGTATGTACCTTTGACTGGTAAACCTGCGCTGTCTTATACTTTTACTCAAGCA
AAAACAGCAGCCAAAAAAGCCCTGGCTCCACTTGGACAGGACTATCTTAAACAAGTTGATTATATTTTTGATAATCGCGT
AATTGATGTAGTTGAGTCGCAAAATAAAGTTACAGGTGCATATTCAGGTGGATCATATGATACCGACGCTTATGAATTGC
TTAACTGGACTGACAATATCGATTCTCTCTACACTCTTGTCCACGAAACCGGCCATTCTGTCCACAGCATGTATACCCGC
AAAAACCAGCCTTATGTCTACGGTGACTATCCTATCTTTGTTGCTGAGATTGCCTCAACCACTAATGAAAATATCCTAAC
CGAATATTTGCTCGATCACGTCACAGATCCCAAAACCCGTGCCTTTGTCTTAAATTATTATCTCGATTCATTCAAAGGAA
CGCTATTTAGACAAACTGAGTTTGCTGAATTTGAACAATATATTCATGAACAAGATGCCAATGGCAACCCATTAACTGCA
GACAAATTAGACAAGTTTTATGGACAATTGAATCAACATTATTATGGCGATAGCGTCGCACCGGGTGGTGAAATCGCCAA
AGAATGGAGCCGCATACCGCACTTTTATTATGACTTTTACGTTTATCAGTACGCTACTGGCTTTGCAGCAGCTACCGCAT
TAGCCAACAAGGTGGTCCATGGAACTGATCAAGATCGCGCTGCCTACCTAGATTTTCTTAAAGCCGGTTCTAGTGCTGCT
CCAACTGATATTATGCAGCATGCAGGAGTTGATATGACTAAGCCAGATTATCTTGAAGATGCCTTTACAACTTTTGCTAA
ACGTTTAGATGAATTTACAGAGATTGTTCAGCACGATTTTAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-582)

Oligopeptidase F (Peptidase_M3_N)

(114-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50

98.502

0.493