Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OZX59_RS03825 Genome accession   NZ_CP113943
Coordinates   804666..806042 (-) Length   458 a.a.
NCBI ID   WP_277126821.1    Uniprot ID   -
Organism   Lactobacillus sp. ESL0681     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 799666..811042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX59_RS03810 (OZX59_03810) - 800618..801508 (-) 891 WP_277126818.1 ATP-binding cassette domain-containing protein -
  OZX59_RS03815 (OZX59_03815) - 801550..802947 (-) 1398 WP_277126819.1 APC family permease -
  OZX59_RS03820 (OZX59_03820) gltX 803092..804591 (-) 1500 WP_277126820.1 glutamate--tRNA ligase -
  OZX59_RS03825 (OZX59_03825) radA 804666..806042 (-) 1377 WP_277126821.1 DNA repair protein RadA Machinery gene
  OZX59_RS03830 (OZX59_03830) - 806042..806590 (-) 549 WP_277126983.1 dUTP diphosphatase -
  OZX59_RS03835 (OZX59_03835) - 806708..807010 (+) 303 WP_277126822.1 hypothetical protein -
  OZX59_RS03840 (OZX59_03840) - 807119..808312 (-) 1194 WP_277126823.1 MFS transporter -
  OZX59_RS03845 (OZX59_03845) - 808317..809759 (-) 1443 WP_277126824.1 FAD-binding protein -
  OZX59_RS03850 (OZX59_03850) - 809772..810506 (-) 735 WP_277126825.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49953.54 Da        Isoelectric Point: 6.7545

>NTDB_id=763677 OZX59_RS03825 WP_277126821.1 804666..806042(-) (radA) [Lactobacillus sp. ESL0681]
MAKIKTKYECRSCGYVSASYLGRCPNCGAWNQFEQESEAVANRSTKGSPSRLIKKTGTNDPVKLNSVQAEKEERILTSSK
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMSDLAKTYKVLYVSGEESASQIKLRANRLDLGASDMLLYPETDMEDI
RQQIAEVEPDFVIIDSIQTMNEPSLDSMTGSASQVREVTSELMKIAKMQAITVFVIGHVTKEGTIAGPKILEHMVDTVLY
FEGDEHHAYRILHSVKNRFGAANEIGMFEMVNEGLQEVTNPSAIFLDERLPQSTGSAIVVSLEGTRPLLAEIQALVTPTA
FGYAKRTTSGIDYNRAALLLAVLEKRGNLMLQNQDVYLTATGGIRLNEPAVDLAVIMAIASSYKNQEISPTDCFVGEVGL
TGEVRRVNKIEARIKEAAKTGFKRIYIPKHNMQAGLKNLGIEVIPVASIRQALKLVLG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=763677 OZX59_RS03825 WP_277126821.1 804666..806042(-) (radA) [Lactobacillus sp. ESL0681]
ATGGCTAAAATAAAAACTAAGTATGAGTGTCGTTCTTGTGGCTATGTTTCGGCAAGTTATTTAGGACGTTGTCCTAATTG
TGGTGCTTGGAACCAATTTGAACAAGAAAGCGAAGCAGTTGCTAACCGTTCTACTAAGGGAAGTCCTAGCCGGTTAATTA
AAAAGACTGGTACTAATGATCCCGTTAAATTAAATAGTGTTCAAGCGGAAAAAGAAGAACGGATTTTGACAAGTTCTAAG
GAATTGAATCGTGTCTTAGGAGGCGGTATTGTTCCAGGGTCTTTAGTCTTAATTGGTGGCGATCCCGGAATTGGAAAGTC
CACATTAATGCTCCAGATTATGAGTGATCTAGCTAAAACATATAAAGTTTTATATGTTTCAGGAGAAGAGTCTGCAAGTC
AAATAAAACTGCGAGCTAATCGCTTGGACCTAGGTGCTAGTGATATGTTACTCTACCCGGAAACCGACATGGAGGATATT
CGCCAGCAAATTGCAGAGGTTGAGCCGGATTTTGTGATTATTGATTCTATTCAAACGATGAACGAGCCCAGTCTTGATTC
GATGACTGGTTCCGCCTCACAAGTTCGAGAAGTGACCAGTGAACTAATGAAAATTGCCAAGATGCAGGCTATTACCGTTT
TTGTCATTGGGCATGTGACTAAGGAAGGAACAATCGCCGGGCCTAAGATTTTGGAACATATGGTGGATACAGTACTTTAT
TTCGAAGGTGATGAACACCATGCTTATCGAATCTTGCATTCTGTTAAAAATCGCTTTGGTGCTGCCAATGAAATTGGGAT
GTTTGAGATGGTTAACGAGGGCTTACAAGAAGTCACCAATCCATCAGCAATTTTTCTCGATGAACGCTTGCCGCAGTCAA
CTGGCTCGGCAATTGTGGTTTCACTTGAAGGAACGCGGCCGCTGCTTGCTGAAATTCAAGCTTTGGTAACGCCAACGGCC
TTTGGCTACGCTAAGAGAACGACTTCTGGTATCGATTATAATCGGGCTGCTTTGCTTTTGGCAGTTCTGGAAAAGCGAGG
CAACCTAATGTTGCAGAATCAAGACGTCTATTTGACGGCAACTGGTGGGATTCGGTTAAATGAGCCTGCTGTTGATCTGG
CAGTGATTATGGCGATTGCATCTAGTTATAAAAATCAAGAGATTTCCCCTACTGATTGTTTTGTTGGTGAGGTTGGCTTA
ACTGGAGAAGTTCGCCGGGTTAATAAAATCGAAGCACGGATTAAAGAAGCAGCTAAAACAGGGTTTAAGCGAATTTATAT
TCCTAAACATAATATGCAAGCCGGTTTGAAAAACTTGGGGATTGAAGTAATTCCAGTTGCTAGTATCAGACAGGCACTAA
AGCTAGTTTTAGGCTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(363-431)

AAA domain (AAA_25)

(61-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

58.515

100

0.585
  radA Streptococcus mitis NCTC 12261

58.515

100

0.585
  radA Streptococcus pneumoniae Rx1

58.515

100

0.585
  radA Streptococcus pneumoniae D39

58.515

100

0.585
  radA Streptococcus pneumoniae R6

58.515

100

0.585
  radA Streptococcus pneumoniae TIGR4

58.515

100

0.585
  radA Bacillus subtilis subsp. subtilis str. 168

56.71

100

0.572