Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OZX57_RS08275 Genome accession   NZ_CP113942
Coordinates   2004929..2006788 (-) Length   619 a.a.
NCBI ID   WP_277162157.1    Uniprot ID   -
Organism   Bifidobacterium sp. ESL0682     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1999929..2011788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX57_RS08270 (OZX57_08270) rcrQ 2002937..2004772 (-) 1836 WP_277162156.1 ABC transporter ATP-binding protein Regulator
  OZX57_RS08275 (OZX57_08275) rcrP 2004929..2006788 (-) 1860 WP_277162157.1 ABC transporter ATP-binding protein Regulator
  OZX57_RS08280 (OZX57_08280) - 2007054..2007581 (-) 528 WP_277162158.1 transcriptional regulator -
  OZX57_RS08285 (OZX57_08285) - 2007942..2009402 (+) 1461 WP_277162159.1 hypothetical protein -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 67924.50 Da        Isoelectric Point: 5.7351

>NTDB_id=763666 OZX57_RS08275 WP_277162157.1 2004929..2006788(-) (rcrP) [Bifidobacterium sp. ESL0682]
MLRISKYLSKTEIGQMLLSLAFIAGQVFFDLKLPDYMSSVTALVETPGSKMADIWKEGGKMLLVSLGSVVCAIAVGYLMA
RIGASFSQRLRSLEFRKVESFGPAEMSKFSTPSLITRSTNDITQIQMFITMGVLLIFRAPIMAVWAICKIAGKGFEWTVA
TAIATVAMLVFVIVIMILVMPKFRSMQRLTDNINAVARENLTGLRVVRAYNAEDYQENKFARVNDDLTNTQLFTTRAMAA
MNPVMSSVMNGLGLAIYWIGAYLIKDAQLPATKLTDFSNMVVFSSYAMQVIMAFLLLSMVFVLWPRADVSAQRVMEVLDT
EPSVKSGTLKEGKPGETGTIEFKNVSFAYPGTRQAMLKDINFTAKKGQTIAFIGSTGSGKSSLVNLVPRFYDATEGEVLI
DGVNVKDYDIKSLRDKIGYVPQQSVMFKGTVASNVSYGDRPGDSETVEVADTSTAKGRKRELALIAGEDKRDELTPEQMD
NVRESSAVAQADEFVERMDGTYDAPIAQSGSNVSGGQKQRLSIARAVYRHPEIMVFDDSFSALDFKTDRAVRDALKKDAA
DSTKLIVAQRVGTIMDADTIVVLDDGKVVGEGTHKELLENCKVYKEIAESQLSPDELAA

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=763666 OZX57_RS08275 WP_277162157.1 2004929..2006788(-) (rcrP) [Bifidobacterium sp. ESL0682]
ATGCTTCGCATCAGCAAATATCTCTCCAAAACGGAGATCGGGCAGATGCTGCTGAGCCTTGCGTTCATCGCAGGGCAGGT
CTTTTTCGACCTGAAACTGCCGGACTACATGTCCAGCGTTACGGCGCTTGTTGAGACGCCAGGCAGCAAAATGGCCGACA
TCTGGAAAGAGGGCGGCAAGATGCTGCTCGTTTCCTTGGGGTCGGTGGTTTGCGCCATCGCCGTCGGTTACCTGATGGCT
CGCATCGGCGCCTCGTTCAGCCAGCGCCTGCGCTCGCTCGAGTTCCGCAAGGTCGAATCCTTCGGCCCGGCCGAGATGAG
CAAGTTCTCGACGCCGTCGCTGATCACGCGCTCCACCAACGACATCACGCAGATTCAGATGTTCATCACCATGGGCGTTC
TGCTGATCTTCCGTGCGCCGATCATGGCCGTCTGGGCAATCTGCAAGATTGCTGGCAAGGGCTTCGAGTGGACGGTCGCC
ACGGCCATCGCCACGGTGGCCATGCTGGTCTTCGTCATCGTCATCATGATTCTGGTGATGCCGAAGTTCCGCTCCATGCA
GCGACTGACCGATAACATCAACGCCGTCGCCCGCGAGAACCTGACCGGCCTGCGCGTCGTCCGCGCCTACAACGCCGAGG
ATTATCAGGAAAACAAGTTCGCCAGGGTGAACGATGATTTGACCAACACCCAGCTGTTCACCACCCGTGCAATGGCCGCG
ATGAACCCGGTCATGTCCAGCGTCATGAACGGCCTGGGCCTGGCAATCTACTGGATCGGCGCCTACCTCATCAAGGACGC
GCAGCTTCCAGCTACCAAGCTCACCGACTTCTCGAACATGGTCGTCTTCTCCAGCTACGCAATGCAGGTCATCATGGCCT
TCCTGCTGCTGAGCATGGTCTTCGTGCTCTGGCCTCGCGCCGACGTCTCCGCCCAGCGTGTGATGGAAGTGCTCGACACC
GAGCCGAGCGTCAAGTCCGGCACCTTGAAGGAAGGCAAGCCCGGCGAGACCGGAACCATCGAGTTCAAGAACGTCAGCTT
CGCTTATCCCGGCACTCGCCAGGCAATGCTCAAAGACATCAACTTCACCGCGAAGAAGGGTCAGACCATCGCCTTCATCG
GCTCCACCGGTTCCGGCAAGTCCTCGCTGGTCAACTTGGTTCCGCGTTTCTACGACGCAACCGAGGGCGAAGTGCTCATC
GACGGCGTGAACGTGAAGGACTACGATATCAAGTCCCTGCGCGACAAGATCGGTTACGTGCCGCAGCAGTCCGTGATGTT
CAAGGGCACCGTGGCATCCAACGTGAGCTACGGCGACCGCCCAGGCGATTCCGAAACCGTCGAGGTTGCGGATACTTCCA
CGGCCAAGGGCCGCAAGCGCGAACTGGCGCTCATCGCCGGCGAGGACAAGCGCGACGAACTGACCCCCGAGCAGATGGAC
AACGTCCGCGAGTCCAGCGCTGTGGCGCAGGCTGACGAGTTCGTCGAGCGCATGGATGGCACGTACGATGCCCCCATCGC
TCAGAGCGGTTCCAACGTCTCTGGCGGCCAGAAGCAGAGGCTTTCCATCGCCCGCGCCGTCTACCGTCACCCGGAGATCA
TGGTCTTCGACGACTCCTTCAGCGCGCTCGATTTCAAGACCGACCGTGCAGTGCGTGACGCCCTCAAGAAGGACGCCGCC
GACTCCACCAAGCTCATCGTCGCCCAGCGTGTGGGCACGATCATGGACGCCGACACCATCGTCGTGCTCGACGACGGCAA
GGTCGTCGGTGAGGGCACGCACAAGGAACTGCTCGAGAACTGCAAGGTCTACAAGGAGATCGCCGAGTCCCAGCTGAGTC
CCGACGAGCTGGCTGCCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(357-539)

ABC transporter transmembrane region (ABC_membrane)

(61-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

49.204

100

0.499