Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OZX57_RS08270 Genome accession   NZ_CP113942
Coordinates   2002937..2004772 (-) Length   611 a.a.
NCBI ID   WP_277162156.1    Uniprot ID   -
Organism   Bifidobacterium sp. ESL0682     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1997937..2009772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX57_RS08265 (OZX57_08265) - 1999551..2002544 (-) 2994 WP_277162155.1 hypothetical protein -
  OZX57_RS08270 (OZX57_08270) rcrQ 2002937..2004772 (-) 1836 WP_277162156.1 ABC transporter ATP-binding protein Regulator
  OZX57_RS08275 (OZX57_08275) rcrP 2004929..2006788 (-) 1860 WP_277162157.1 ABC transporter ATP-binding protein Regulator
  OZX57_RS08280 (OZX57_08280) - 2007054..2007581 (-) 528 WP_277162158.1 transcriptional regulator -
  OZX57_RS08285 (OZX57_08285) - 2007942..2009402 (+) 1461 WP_277162159.1 hypothetical protein -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 67296.81 Da        Isoelectric Point: 6.6350

>NTDB_id=763665 OZX57_RS08270 WP_277162156.1 2002937..2004772(-) (rcrQ) [Bifidobacterium sp. ESL0682]
MPRMRGPVEKPADFGGVMLKLVRYCRKYLPAIVIALVLGAIGTVCQIVGPDQLKNMTNAIAKGLPAMVHGRPVMGAVDMS
EVTRIAWLLVGLYVGYAVLGYAQHWMMATVTQRIAQNLRKSISDKINKLPLKYFDHTSYGDVLSRITNDVDAIGQTLGQS
LGMLITSTTLFIGSLIMMFYNNVIMTLCAIAISVLGVIIMMTIMHFSQKYFARQQIALGDVNGHVEEMYSGHTVVKAYNG
EADSIRRFEKYNNDLYDSAWKSQFLSGLMNPMMNMVGNLSFVAVCIVGGALAINGKIEFGVIVAFMMYVRLFTQPLSQFA
QAFQNLQRCAAASERVFGFLEEPEMSNESNKPALLGRDSKTGEPTRVRGDVEFKNVSFGYEPGKPIIHDFSADVKAGQKV
AIVGPTGAGKSTMVNLLMRFYNIDGGAMYIDGVDTSTVPRANVHDQFSMVLQDTWVFRGTVKENVAYSKKGVTDQQIEDA
CKAVGLDHYVQSLPQGYDTVLDDNSSLSQGQRQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDDLTVGRTSFV
IAHRLSTIKDADMILVMNHGDIIERGTHDELLEKGGFYADLYNSQFSTLVA

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=763665 OZX57_RS08270 WP_277162156.1 2002937..2004772(-) (rcrQ) [Bifidobacterium sp. ESL0682]
ATGCCAAGAATGAGGGGACCGGTCGAGAAGCCGGCCGATTTCGGCGGAGTGATGCTCAAGCTGGTGCGTTACTGCCGCAA
ATACCTGCCCGCCATCGTCATCGCGCTCGTTTTGGGTGCCATCGGCACCGTCTGCCAGATTGTCGGACCGGACCAACTGA
AGAACATGACCAACGCCATCGCCAAGGGCCTGCCTGCCATGGTGCACGGGCGTCCCGTGATGGGCGCGGTCGACATGAGT
GAAGTCACGCGCATCGCATGGCTGCTGGTCGGCCTGTACGTCGGCTATGCCGTCCTCGGTTATGCGCAGCACTGGATGAT
GGCCACCGTCACCCAGCGCATCGCACAGAACCTGCGCAAGTCGATTTCCGACAAGATCAACAAGCTGCCGCTCAAGTACT
TCGACCACACCAGCTACGGCGACGTGCTCTCGCGCATCACCAACGACGTCGACGCCATCGGCCAGACCTTGGGCCAGTCG
CTGGGCATGCTGATCACCTCGACCACGTTGTTCATCGGCTCGCTGATCATGATGTTCTACAACAACGTCATCATGACCTT
GTGCGCCATCGCCATCTCGGTCCTGGGTGTCATCATCATGATGACCATCATGCACTTCTCGCAAAAGTACTTCGCTCGCC
AGCAGATCGCGCTCGGTGACGTCAACGGCCACGTCGAGGAAATGTATTCCGGCCATACCGTCGTTAAGGCGTACAACGGC
GAGGCCGACTCCATCCGTCGCTTCGAGAAGTACAACAACGACCTCTACGATTCCGCATGGAAGAGCCAGTTCCTCTCGGG
CCTGATGAACCCGATGATGAACATGGTCGGCAACCTGAGCTTCGTCGCGGTCTGCATCGTCGGCGGTGCGCTCGCCATCA
ACGGCAAGATCGAGTTCGGCGTCATCGTGGCCTTCATGATGTACGTCCGCCTCTTCACCCAGCCGCTTTCGCAGTTCGCT
CAGGCCTTCCAGAACCTGCAGCGTTGCGCCGCAGCATCCGAGCGCGTCTTCGGCTTCCTCGAGGAGCCTGAGATGAGCAA
CGAGAGCAACAAGCCTGCGCTGCTCGGTCGCGACTCCAAGACCGGTGAACCCACCCGCGTGCGTGGTGATGTCGAGTTCA
AGAACGTCAGCTTCGGCTACGAGCCCGGCAAGCCGATCATCCACGACTTCTCCGCGGATGTGAAGGCCGGCCAGAAGGTC
GCCATCGTCGGCCCGACCGGCGCCGGCAAGTCCACCATGGTCAACCTGCTGATGCGCTTCTACAACATCGACGGCGGCGC
CATGTACATCGACGGTGTCGATACCTCGACGGTTCCGCGCGCCAACGTGCACGACCAGTTCTCTATGGTGCTGCAGGATA
CATGGGTCTTCCGTGGCACGGTCAAGGAGAACGTCGCTTACTCCAAGAAGGGCGTCACCGACCAGCAGATCGAAGACGCG
TGCAAGGCCGTCGGTCTTGACCATTACGTGCAGTCGCTGCCGCAGGGCTACGACACCGTGCTCGACGACAATTCCTCGCT
TTCGCAGGGCCAGCGCCAGTTGCTGACGATTGCCCGCGCGATGGTGCAGGATGCCCCGATCCTGATTCTGGACGAGGCCA
CCTCGTCGGTCGATACGCGTACTGAGGAGCTGATTCAGAAGGCGATGGATGACCTGACGGTTGGCCGCACGAGCTTCGTG
ATCGCGCACCGTCTCTCCACCATCAAGGATGCGGACATGATTCTGGTCATGAACCATGGCGACATCATCGAACGCGGCAC
TCACGACGAGTTGCTGGAGAAGGGTGGCTTCTACGCCGACCTCTACAACAGCCAGTTCTCCACGTTGGTGGCATAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(33-316)

ABC transporter (ABC_tran)

(388-535)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.703

96.89

0.511