Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OZX56_RS02480 Genome accession   NZ_CP113941
Coordinates   506822..508198 (+) Length   458 a.a.
NCBI ID   WP_277140048.1    Uniprot ID   -
Organism   Lactobacillus sp. ESL0684     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 501822..513198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX56_RS02460 (OZX56_02460) - 502618..504267 (-) 1650 WP_277140045.1 IS1182 family transposase -
  OZX56_RS02465 (OZX56_02465) pepC 504424..505770 (-) 1347 WP_277140046.1 aminopeptidase C -
  OZX56_RS02470 (OZX56_02470) - 505851..506156 (-) 306 WP_277140047.1 hypothetical protein -
  OZX56_RS02475 (OZX56_02475) - 506274..506822 (+) 549 WP_277140340.1 dUTP diphosphatase -
  OZX56_RS02480 (OZX56_02480) radA 506822..508198 (+) 1377 WP_277140048.1 DNA repair protein RadA Machinery gene
  OZX56_RS02485 (OZX56_02485) gltX 508273..509772 (+) 1500 WP_277140049.1 glutamate--tRNA ligase -
  OZX56_RS02490 (OZX56_02490) - 509917..511314 (+) 1398 WP_277140341.1 APC family permease -
  OZX56_RS02495 (OZX56_02495) - 511356..512246 (+) 891 WP_277140050.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49952.60 Da        Isoelectric Point: 7.3465

>NTDB_id=763647 OZX56_RS02480 WP_277140048.1 506822..508198(+) (radA) [Lactobacillus sp. ESL0684]
MAKIKTKYKCRSCGYVSASYLGRCPNCGAWNQFEQESEAVANRSTKGSPSRLIKKTGTNDPVKLNSVQAEKEERILTSSK
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMSDLAKTYKVLYVSGEESASQIKLRANRLDLGASDMLLYPETDMEDI
RQQIAEVEPDFVIIDSIQTMNEPSLDSMTGSASQVREVTSELMKIAKMQAITVFVIGHVTKEGTIAGPKILEHMVDTVLY
FEGDEHHAYRILHSVKNRFGAANEIGMFEMVNEGLQEVTNPSAIFLDERLPQSTGSAIVVSLEGTRPLLAEIQALVTPTA
FGYAKRTTSGIDYNRAALLLAVLEKRGNLMLQNQDVYLTATGGIRLNEPAVDLAVIMAIASSYKNQEISPTDCFVGEVGL
TGEVRRVNKIEARIKEAAKTGFKRIYIPKHNMQAGLKNLGIEVIPVASIRQALKLVLG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=763647 OZX56_RS02480 WP_277140048.1 506822..508198(+) (radA) [Lactobacillus sp. ESL0684]
ATGGCTAAAATAAAAACTAAGTATAAGTGTCGTTCTTGTGGCTATGTTTCGGCAAGTTATTTAGGACGTTGTCCTAATTG
TGGTGCTTGGAACCAATTTGAACAAGAAAGCGAAGCAGTTGCTAACCGTTCTACTAAGGGAAGTCCTAGCCGGTTAATTA
AAAAGACTGGTACTAATGATCCCGTTAAATTAAATAGTGTTCAAGCGGAAAAAGAAGAACGGATTTTGACAAGTTCTAAG
GAATTGAATCGTGTCTTAGGAGGCGGTATTGTTCCAGGGTCTTTAGTCTTAATTGGTGGGGATCCCGGAATTGGAAAGTC
CACATTAATGCTCCAGATTATGAGTGATCTAGCTAAAACATATAAAGTTTTATATGTTTCAGGAGAAGAGTCTGCAAGTC
AAATAAAACTGCGAGCTAATCGCTTGGACCTAGGTGCTAGCGATATGTTACTCTATCCGGAAACCGACATGGAAGATATT
CGCCAGCAAATTGCAGAGGTTGAGCCGGATTTTGTGATTATTGATTCTATTCAAACGATGAACGAGCCCAGTCTTGATTC
GATGACTGGTTCCGCCTCACAAGTTCGAGAAGTGACCAGTGAACTAATGAAAATTGCCAAGATGCAGGCTATTACCGTTT
TTGTCATTGGGCATGTGACTAAGGAAGGAACAATTGCCGGGCCTAAGATTTTGGAACATATGGTGGATACAGTACTTTAT
TTCGAAGGTGATGAACACCATGCTTATCGAATCTTGCATTCTGTTAAAAATCGCTTTGGTGCTGCCAATGAAATTGGGAT
GTTTGAGATGGTTAACGAGGGATTACAAGAAGTCACCAATCCATCAGCAATTTTTCTCGATGAACGCTTGCCGCAGTCAA
CTGGCTCGGCAATTGTGGTTTCACTTGAAGGAACGCGGCCGCTGCTTGCTGAAATTCAAGCTTTGGTAACGCCAACAGCC
TTTGGCTACGCTAAGAGAACGACTTCTGGTATCGATTATAATCGGGCTGCTTTGCTTTTGGCAGTTCTGGAAAAGCGTGG
CAACCTAATGTTGCAGAATCAGGACGTCTATTTGACGGCAACTGGTGGAATTCGGTTAAATGAGCCTGCTGTTGATCTGG
CAGTGATTATGGCGATTGCATCTAGTTATAAAAATCAAGAGATTTCCCCTACTGATTGTTTTGTTGGTGAGGTTGGCTTA
ACTGGAGAAGTTCGCCGGGTTAATAAAATCGAAGCACGGATTAAAGAAGCAGCTAAAACAGGGTTTAAGCGAATTTATAT
TCCTAAACATAATATGCAAGCCGGTTTGAAAAACTTGGGGATTGAAGTAATTCCAGTTGCTAGTATCAGACAGGCACTAA
AGCTAGTTTTAGGCTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(363-431)

AAA domain (AAA_25)

(61-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

58.515

100

0.585
  radA Streptococcus mitis NCTC 12261

58.515

100

0.585
  radA Streptococcus pneumoniae Rx1

58.515

100

0.585
  radA Streptococcus pneumoniae D39

58.515

100

0.585
  radA Streptococcus pneumoniae R6

58.515

100

0.585
  radA Streptococcus pneumoniae TIGR4

58.515

100

0.585
  radA Bacillus subtilis subsp. subtilis str. 168

56.71

100

0.572