Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   OZX56_RS01735 Genome accession   NZ_CP113941
Coordinates   367025..368830 (-) Length   601 a.a.
NCBI ID   WP_277139961.1    Uniprot ID   -
Organism   Lactobacillus sp. ESL0684     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 362025..373830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX56_RS01705 (OZX56_01705) - 362108..362953 (+) 846 WP_277139955.1 DUF3737 family protein -
  OZX56_RS01710 (OZX56_01710) - 362963..364144 (+) 1182 WP_277139956.1 MalY/PatB family protein -
  OZX56_RS01715 (OZX56_01715) - 364134..364880 (+) 747 WP_277139957.1 SDR family oxidoreductase -
  OZX56_RS01720 (OZX56_01720) - 364896..365435 (+) 540 WP_277139958.1 NAD(P)H-dependent oxidoreductase -
  OZX56_RS01725 (OZX56_01725) - 365432..366331 (+) 900 WP_277139959.1 alpha/beta hydrolase -
  OZX56_RS01730 (OZX56_01730) - 366527..366952 (+) 426 WP_277139960.1 hypothetical protein -
  OZX56_RS01735 (OZX56_01735) pepF 367025..368830 (-) 1806 WP_277139961.1 oligoendopeptidase F Regulator
  OZX56_RS01740 (OZX56_01740) - 368990..370189 (+) 1200 WP_277139962.1 LCP family protein -
  OZX56_RS01745 (OZX56_01745) - 370210..370581 (+) 372 WP_277139963.1 hypothetical protein -
  OZX56_RS01750 (OZX56_01750) - 370635..371549 (-) 915 WP_277139964.1 proline-specific peptidase family protein -
  OZX56_RS01755 (OZX56_01755) - 371734..372474 (+) 741 WP_277139965.1 PAS domain-containing protein -
  OZX56_RS01760 (OZX56_01760) - 372578..373027 (+) 450 WP_277126959.1 DUF3290 domain-containing protein -
  OZX56_RS01765 (OZX56_01765) - 373037..373669 (+) 633 WP_277139966.1 DUF421 domain-containing protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68245.01 Da        Isoelectric Point: 4.5817

>NTDB_id=763646 OZX56_RS01735 WP_277139961.1 367025..368830(-) (pepF) [Lactobacillus sp. ESL0684]
MTIPTRDQVEDNLKWDLTRVFKSDQDWEDEYTIVKQEIQTLTSLQAEFTKTATNLFTSLSKILTVERRLEKLYVYASMSS
DIDTSNAHYLGYVAQSQTLISQFEAATAFIKPAILALPADTLTNFKTSEPKLKQLDHWLEQITRLRPHTLSANEEKLIAD
TGDAMGVSENTFNVLTNSDLEYGYVQNENGEMVQLSDGLYDTLIQSQDRQVRRGAFETMYATYGQFENSLASTLSGVVKA
HNFTAQVHHYDSARDAALDENGVPTIVYDTLIQEVNNHLDLLHSYVALRKQILGLKDLQMWDMYVPLTGKPALSYTFTQA
KTAAKKALAPLGQDYLKQVDYIFDNRVIDVVESQNKVTGAYSGGSYDTDAYELLNWTDNIDSLYTLVHETGHSVHSMYTR
KNQPYVYGDYPIFVAEIASTTNENILTEYLLDHVTDPKTRAFVLNYYLDSFKGTLFRQTEFAEFEQYIHEQDANGNPLTA
DKLDKFYGQLNQHYYGDSVAPGGEIAKEWSRIPHFYYDFYVYQYATGFAAATALANKVVHGTDQDRAAYLDFLKAGSSAA
PTDIMQHAGVDMTKPDYLEDAFTTFAKRLDEFTEIVQHDFK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=763646 OZX56_RS01735 WP_277139961.1 367025..368830(-) (pepF) [Lactobacillus sp. ESL0684]
ATGACCATTCCAACAAGAGATCAAGTTGAAGATAACTTAAAGTGGGATTTAACCCGCGTCTTCAAGTCCGACCAAGACTG
GGAAGATGAATATACAATAGTTAAACAGGAAATACAAACTTTAACTAGTTTACAGGCAGAATTTACCAAAACTGCTACCA
ATTTATTTACCAGCTTAAGTAAAATTTTAACTGTTGAACGTAGATTAGAAAAGCTCTATGTCTATGCTTCAATGTCCAGC
GATATTGATACGAGTAATGCTCATTATTTAGGTTATGTCGCCCAAAGCCAAACTCTAATTAGCCAATTTGAAGCCGCTAC
TGCCTTCATTAAACCTGCTATCTTAGCGCTGCCGGCAGATACACTCACTAATTTTAAAACTAGTGAACCTAAATTAAAAC
AGCTTGACCATTGGCTAGAGCAAATTACCCGTCTGCGGCCGCACACCTTGTCTGCAAACGAGGAAAAGTTAATCGCAGAT
ACCGGTGATGCGATGGGTGTCTCTGAAAATACTTTTAACGTCTTGACTAATTCAGATTTAGAATATGGCTACGTTCAAAA
TGAGAACGGCGAAATGGTGCAATTATCTGATGGCCTTTATGATACTTTAATTCAGTCTCAAGATCGGCAAGTTAGACGCG
GCGCTTTTGAAACAATGTATGCCACTTATGGTCAGTTTGAAAATTCACTCGCCTCAACGCTAAGCGGTGTAGTTAAAGCA
CACAATTTTACTGCTCAAGTTCACCATTACGACAGTGCTCGTGACGCAGCTCTAGATGAAAATGGCGTGCCGACTATCGT
ATACGACACCCTAATTCAAGAGGTTAATAACCACTTGGACTTACTGCACAGTTACGTTGCCTTACGCAAACAAATCTTAG
GGCTTAAAGATTTACAAATGTGGGACATGTATGTACCTTTGACTGGTAAACCTGCGCTGTCTTATACTTTTACTCAAGCA
AAAACAGCAGCCAAAAAAGCCCTGGCTCCACTTGGACAGGACTATCTTAAACAAGTTGATTATATTTTTGATAATCGCGT
AATTGATGTAGTTGAGTCGCAAAATAAAGTTACAGGTGCATACTCGGGTGGTTCGTATGACACTGATGCCTACGAATTGC
TTAACTGGACTGACAATATCGATTCTCTCTACACTCTTGTCCACGAAACCGGCCATTCTGTCCACAGCATGTATACCCGC
AAAAACCAGCCTTATGTCTACGGTGACTATCCTATCTTTGTTGCTGAGATTGCCTCAACCACTAATGAAAATATCCTAAC
CGAATATTTGCTCGATCACGTCACAGATCCCAAAACCCGTGCCTTTGTCTTAAATTATTATCTCGATTCATTCAAAGGAA
CGCTATTTAGACAAACTGAGTTTGCTGAATTTGAACAATATATTCATGAACAAGATGCCAATGGCAACCCATTAACTGCA
GATAAATTAGACAAGTTTTATGGACAATTGAATCAACATTATTATGGCGATAGCGTCGCACCGGGTGGTGAAATCGCCAA
AGAATGGAGCCGCATACCGCACTTTTATTATGACTTTTACGTTTATCAGTACGCTACTGGCTTTGCAGCAGCTACCGCAT
TAGCCAACAAGGTGGTCCATGGAACTGATCAAGATCGCGCTGCCTACCTAGATTTTCTTAAAGCCGGTTCTAGTGCTGCT
CCAACTGATATTATGCAGCATGCAGGAGTTGATATGACTAAGCCAGATTATCTTGAAGATGCCTTTACAACTTTTGCTAA
ACGTTTAGATGAATTTACAGAGATTGTTCAGCACGATTTTAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-582)

Oligopeptidase F (Peptidase_M3_N)

(114-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.169

98.502

0.494