Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OZX62_RS09495 Genome accession   NZ_CP113939
Coordinates   2452580..2454439 (-) Length   619 a.a.
NCBI ID   WP_277175938.1    Uniprot ID   -
Organism   Bifidobacterium sp. ESL0690     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2447580..2459439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX62_RS09490 (OZX62_09490) rcrQ 2450507..2452342 (-) 1836 WP_277175937.1 ABC transporter ATP-binding protein Regulator
  OZX62_RS09495 (OZX62_09495) rcrP 2452580..2454439 (-) 1860 WP_277175938.1 ABC transporter ATP-binding protein Regulator
  OZX62_RS09500 (OZX62_09500) - 2454796..2455323 (-) 528 WP_277175939.1 transcriptional regulator -
  OZX62_RS09505 (OZX62_09505) - 2455637..2455840 (-) 204 WP_277142805.1 hypothetical protein -
  OZX62_RS09510 (OZX62_09510) - 2456236..2457774 (-) 1539 WP_277175940.1 amino acid permease -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 68167.86 Da        Isoelectric Point: 5.3770

>NTDB_id=763643 OZX62_RS09495 WP_277175938.1 2452580..2454439(-) (rcrP) [Bifidobacterium sp. ESL0690]
MLRISKYLSKTEIGQLLLSLAFIAGQVFFDLKLPDYMSKVTALVETPGSKMIDIWKEGGKMLLVSLGSVICAIVVGYFMA
RVGASFSQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDITQIQMFITMGLLLVFRAPIMAVWAIFKIAGKGFEWTVA
TAIATAIMLVFVIIIMIMVMPKFRSMQRLTDNINAVARENLTGLRVVRAYNAEDYQENKFARVNDDLTNTQLFTTRAMAA
MNPVMSSVMNGLGLAIYWIGAYLIKDAALPATKLTDFSNMVVFSSYAMQVIMAFLLLSMVFVLWPRADVSAQRVLEVLDT
EPSVKSGTLKEGKPGETGTVEFKNVSFAYPDTREAMLKDINFTAKKGQTVAFIGATGSGKSSLVNLVPRFYDATEGEVLV
DGVNVKDYDIKDLRDKIGYVPQQSVMFKGTVASNVSYGDRPGDAETVEVADTSTAKGRKRELELIAGEDKRDELTPEQMA
NVRESSEVAQADEFVERMDGEYEAPIAQSGSNVSGGQKQRLSIARAVYRHPEIMVFDDSFSALDFKTDRAVRDALKKDAA
ESTKLIVAQRVGTIMDADTIVVLDDGKVVGEGTHKELLKTCKVYKEIAESQLSPDELAA

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=763643 OZX62_RS09495 WP_277175938.1 2452580..2454439(-) (rcrP) [Bifidobacterium sp. ESL0690]
ATGCTTCGCATCAGCAAATATCTCTCCAAAACGGAGATCGGGCAGCTGCTGCTGAGCCTTGCGTTCATCGCAGGGCAGGT
CTTTTTCGACCTGAAGCTGCCGGACTACATGTCCAAAGTCACGGCGCTGGTCGAGACGCCGGGCAGCAAGATGATCGACA
TCTGGAAAGAGGGCGGCAAGATGCTGCTCGTCTCTCTGGGCTCGGTGATTTGCGCCATCGTCGTCGGCTATTTCATGGCC
CGCGTCGGCGCTTCGTTCAGCCAGCGTCTGCGCTCGCTTGAGTTTCGCAAGGTGGAATCCTTCGGGCCTGCCGAAATGAG
CAAGTTTTCCACAGCCTCGCTCATCACCCGCTCCACCAACGACATCACGCAGATCCAGATGTTCATCACCATGGGCCTGC
TGCTCGTCTTCCGCGCGCCGATCATGGCCGTCTGGGCCATTTTCAAGATTGCCGGCAAGGGCTTCGAATGGACGGTCGCC
ACGGCCATCGCCACCGCGATCATGCTGGTTTTCGTCATTATCATCATGATCATGGTGATGCCGAAGTTCCGTTCGATGCA
GCGCCTGACCGACAACATAAACGCTGTCGCCCGCGAGAACCTGACCGGCCTGCGCGTCGTCCGCGCCTATAACGCCGAGG
ATTATCAGGAAAACAAGTTCGCGCGTGTCAACGACGATTTGACCAATACCCAGCTCTTCACCACCCGCGCGATGGCCGCG
ATGAACCCCGTCATGTCCAGTGTGATGAACGGCCTCGGCCTGGCGATCTACTGGATTGGTGCCTACCTCATCAAGGACGC
GGCGCTGCCGGCCACCAAGCTTACCGATTTCTCGAACATGGTCGTCTTTTCCAGCTACGCGATGCAGGTCATCATGGCCT
TCCTCCTGCTGAGCATGGTCTTCGTGCTCTGGCCGCGTGCCGACGTTTCCGCCCAGCGTGTGCTGGAAGTGCTCGACACC
GAGCCGAGCGTGAAGTCCGGAACGCTCAAAGAAGGCAAGCCCGGCGAGACCGGAACCGTCGAGTTCAAGAACGTCAGCTT
TGCCTACCCCGACACCCGCGAGGCGATGCTCAAAGACATCAACTTTACCGCCAAGAAGGGCCAGACCGTCGCGTTTATCG
GCGCCACCGGTTCCGGCAAATCCTCGCTGGTGAACCTGGTGCCGCGCTTCTACGACGCGACCGAGGGTGAAGTGCTCGTC
GACGGCGTCAATGTCAAGGACTACGACATCAAGGATTTGCGCGACAAGATCGGTTACGTGCCGCAGCAGTCGGTGATGTT
CAAGGGCACCGTGGCTTCCAACGTGAGCTATGGCGACCGGCCCGGCGACGCCGAGACCGTCGAGGTCGCCGACACTTCCA
CGGCCAAGGGGCGCAAGCGCGAATTGGAGCTGATTGCAGGCGAAGACAAGCGCGACGAACTAACGCCCGAACAAATGGCC
AATGTCCGCGAATCCAGCGAGGTCGCGCAGGCCGACGAGTTCGTGGAGCGCATGGACGGCGAGTACGAGGCGCCCATCGC
GCAAAGCGGCTCCAACGTCTCCGGCGGTCAGAAGCAGCGGCTTTCCATCGCCCGCGCCGTCTACCGTCACCCCGAAATCA
TGGTCTTCGATGACTCGTTCAGCGCGCTCGATTTCAAGACCGACCGTGCGGTGCGCGACGCCCTCAAGAAAGACGCCGCC
GAGTCCACCAAGCTCATCGTCGCCCAGCGCGTCGGCACGATCATGGACGCCGACACCATCGTCGTGCTTGACGACGGCAA
GGTCGTGGGCGAAGGAACGCACAAGGAACTGCTCAAGACCTGCAAGGTCTACAAGGAGATCGCCGAGTCCCAGCTGAGTC
CCGACGAGCTGGCCGCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(61-294)

ABC transporter (ABC_tran)

(357-539)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

49.363

100

0.501