Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OZX62_RS09490 Genome accession   NZ_CP113939
Coordinates   2450507..2452342 (-) Length   611 a.a.
NCBI ID   WP_277175937.1    Uniprot ID   -
Organism   Bifidobacterium sp. ESL0690     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2445507..2457342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX62_RS09485 (OZX62_09485) - 2446497..2450030 (-) 3534 WP_277175936.1 BspA family leucine-rich repeat surface protein -
  OZX62_RS09490 (OZX62_09490) rcrQ 2450507..2452342 (-) 1836 WP_277175937.1 ABC transporter ATP-binding protein Regulator
  OZX62_RS09495 (OZX62_09495) rcrP 2452580..2454439 (-) 1860 WP_277175938.1 ABC transporter ATP-binding protein Regulator
  OZX62_RS09500 (OZX62_09500) - 2454796..2455323 (-) 528 WP_277175939.1 transcriptional regulator -
  OZX62_RS09505 (OZX62_09505) - 2455637..2455840 (-) 204 WP_277142805.1 hypothetical protein -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 67165.94 Da        Isoelectric Point: 7.0841

>NTDB_id=763642 OZX62_RS09490 WP_277175937.1 2450507..2452342(-) (rcrQ) [Bifidobacterium sp. ESL0690]
MPRMRGPVEKPADFGGVMLKLVRYCRKYLPVIIIALVLGAAGTICQIIGPDQLKNMTNAIAKGLPALVHGKPVMGAVDMG
EVTRIAWLLVGLYAGYAILGYAQHWMMATVTQRIAQSLRKSISDKINKLPLKYFDHTSYGDVLSRITNDVDAIGQTLGQS
LGMLITSITLFVGSLIMMFYNNVIMTLCAIAVSVLGVVVMLLIMHYSQKYFARQQIALGDVNGHVEEMYSGHIVVKAYNG
EADSIRRFEKYNNDLYDSAWKSQFLSGLMGPMMNMIGNLSFVAVCIVGGALAINGQIEFGVIVAFMMYVRLFTQPLSQFA
QAFQNLQRCAAASERVFGFLEEPEMSDESKKPALLGRDPKTGKPVRVRGDVEFKDVSFGYEPGKPIIHDFSASVKAGQKV
AIVGPTGAGKSTMVNLLMRFYDIDGGAMYIDGIDTSTVPRANVHDQFSMVLQDTWVFRGTVKENVAYSKKGVTDQQIEDA
CKAVGLDHYVRSLPQGYDTVLDDNSSLSQGQRQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDDLTVGRTSFV
IAHRLSTIKDADMILVMNHGDIVERGTHDELLKKGGFYADLYNSQFSTLVA

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=763642 OZX62_RS09490 WP_277175937.1 2450507..2452342(-) (rcrQ) [Bifidobacterium sp. ESL0690]
ATGCCAAGAATGAGGGGACCGGTCGAGAAGCCGGCTGATTTCGGCGGAGTGATGCTCAAACTCGTGCGTTACTGCCGCAA
ATACCTGCCCGTCATCATCATCGCGCTCGTTTTGGGCGCGGCCGGCACCATCTGCCAGATCATCGGGCCGGATCAACTGA
AGAACATGACCAACGCCATCGCCAAGGGCCTGCCCGCCCTGGTGCACGGCAAGCCCGTGATGGGCGCGGTCGATATGGGC
GAGGTCACGCGAATCGCATGGCTGCTGGTCGGTCTCTATGCCGGCTATGCCATCCTCGGCTACGCGCAGCACTGGATGAT
GGCCACCGTCACCCAGCGCATCGCCCAAAGCCTGCGCAAGTCGATCTCCGACAAGATCAACAAGCTGCCGCTCAAATACT
TCGACCACACCAGCTACGGCGACGTGCTTTCGCGCATCACCAACGACGTCGACGCCATCGGCCAGACCCTGGGCCAGTCG
CTGGGCATGCTCATTACGTCGATCACGCTGTTCGTCGGCTCGCTGATCATGATGTTCTACAACAACGTCATCATGACGCT
TTGCGCGATTGCGGTCTCGGTTTTGGGCGTCGTGGTCATGCTGCTCATCATGCACTATTCGCAGAAATACTTCGCCCGCC
AGCAGATCGCGCTCGGCGACGTCAACGGCCACGTCGAAGAGATGTACTCCGGCCATATCGTCGTCAAGGCCTACAACGGC
GAAGCCGACTCCATCCGTCGCTTCGAGAAGTACAACAACGACCTCTACGATTCCGCGTGGAAGAGCCAGTTCCTCTCCGG
CCTGATGGGCCCGATGATGAACATGATCGGCAACCTGAGCTTCGTCGCGGTCTGCATCGTCGGCGGCGCGCTCGCCATCA
ACGGGCAGATCGAGTTCGGCGTCATCGTGGCCTTCATGATGTACGTCCGCCTCTTCACCCAGCCGCTTTCACAGTTCGCC
CAGGCCTTCCAGAACCTCCAGCGTTGCGCCGCAGCGTCCGAGCGCGTCTTCGGCTTCCTCGAGGAGCCCGAGATGAGCGA
CGAGAGCAAGAAGCCCGCGCTGCTCGGCCGCGACCCGAAGACCGGCAAGCCCGTTCGCGTGCGTGGCGACGTCGAGTTCA
AGGACGTCAGCTTCGGCTATGAGCCAGGCAAGCCGATCATTCACGACTTCTCGGCGAGTGTGAAGGCCGGCCAGAAGGTC
GCCATCGTCGGCCCGACCGGTGCCGGCAAGTCCACTATGGTCAACCTCTTGATGCGCTTCTACGATATTGACGGCGGCGC
CATGTACATCGACGGCATCGATACCTCGACGGTCCCACGCGCCAACGTACACGACCAATTCTCTATGGTTCTGCAGGACA
CATGGGTCTTCCGCGGAACGGTCAAGGAGAACGTCGCGTATAGCAAGAAGGGTGTCACCGACCAGCAGATCGAGGACGCA
TGCAAAGCCGTCGGTCTTGACCATTACGTGCGCTCGCTGCCGCAGGGCTACGACACCGTGCTCGACGACAATTCCTCGCT
TTCGCAGGGCCAGCGCCAGTTGCTGACGATCGCCCGCGCGATGGTGCAGGATGCGCCGATTCTGATCTTGGACGAGGCCA
CGTCGTCGGTCGATACCCGTACCGAGGAGCTGATCCAGAAGGCGATGGATGACCTGACGGTTGGCCGCACGAGCTTCGTG
ATCGCGCACCGTCTCTCGACCATCAAGGATGCGGACATGATCCTGGTGATGAACCACGGCGACATCGTCGAACGCGGCAC
CCACGACGAGCTGCTGAAGAAAGGCGGCTTCTACGCCGACCTCTACAACAGCCAGTTCTCCACGTTGGTCGCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(388-535)

ABC transporter transmembrane region (ABC_membrane)

(32-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.872

96.89

0.512