Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OZX64_RS08560 Genome accession   NZ_CP113929
Coordinates   2324812..2326671 (-) Length   619 a.a.
NCBI ID   WP_277172750.1    Uniprot ID   -
Organism   Bifidobacterium sp. ESL0704     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2319812..2331671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX64_RS08550 (OZX64_08560) - 2321123..2322103 (-) 981 WP_277172745.1 class C sortase -
  OZX64_RS08555 (OZX64_08565) rcrQ 2322644..2324479 (-) 1836 WP_277172748.1 ABC transporter ATP-binding protein Regulator
  OZX64_RS08560 (OZX64_08570) rcrP 2324812..2326671 (-) 1860 WP_277172750.1 ABC transporter ATP-binding protein Regulator
  OZX64_RS08565 (OZX64_08575) - 2326868..2327434 (-) 567 WP_277175035.1 MarR family transcriptional regulator -
  OZX64_RS08570 (OZX64_08580) - 2327661..2327864 (-) 204 WP_277146035.1 hypothetical protein -
  OZX64_RS08575 (OZX64_08585) - 2328270..2329847 (-) 1578 WP_277172753.1 amino acid permease -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 67645.98 Da        Isoelectric Point: 5.4858

>NTDB_id=763589 OZX64_RS08560 WP_277172750.1 2324812..2326671(-) (rcrP) [Bifidobacterium sp. ESL0704]
MLRISKYLSKTEIGQMLLSLAFIAGQVFFDLKLPDYMSRVTALVETPGSKMADIFKEGGKMLLVSLGSVVCAIAVGYFMA
RVGASFSQRLRSLEFRKVESFGPAEMSRFSTASLITRSTNDITQIQMFITMGVLLVFRAPIMAVWAVCKIAGKGFQWTLA
TGIATVAMLVFVVIIMTLVMPKFRSMQRLTDNINAVARENLTGLRVVRAYNAEDYQEAKFARVNDDLTRTQLFTTRAMAA
MIPVMSSVMNGLGLAIYWIGAYLIKDAALPADKLTDFSNMVVFSSYAMQVIMAFLLLSMVFVLWPRADVSAQRVMEVLDT
EPSVKSGSVREGKPGETGTVEFRNVGFAYPDTRDEMLRGVSFTARRGQTVAFIGSTGSGKSTLVNLVPRFYDTTEGEVLI
DGVNVRDYDIKALRDKIGYVPQQSVMFKGTVASNVSYGDQPGDAETVEVADTSTAAGRKRELELIAGESQRDELSAEQKA
DVRAASEVAQAGEFVDRMEGGYDAPIAQGGSNVSGGQKQRLSIARAVYRHPEIMVFDDSFSALDFKTDRAVRDALKEHAA
DATKLIVAQRVGTIMDADQIVVLDDGKVVGLGTHKELLATCEVYQQIAESQLSPDELAA

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=763589 OZX64_RS08560 WP_277172750.1 2324812..2326671(-) (rcrP) [Bifidobacterium sp. ESL0704]
ATGCTTCGTATCAGCAAATACCTCTCCAAAACGGAGATCGGTCAGATGCTGCTCAGCCTTGCCTTCATTGCCGGCCAGGT
CTTTTTCGACCTGAAACTGCCGGACTACATGTCACGGGTCACGGCGCTGGTCGAGACGCCGGGCAGCAAGATGGCTGACA
TCTTCAAAGAGGGCGGCAAGATGCTGCTCGTCTCGCTGGGCTCGGTCGTCTGCGCCATCGCCGTCGGCTACTTCATGGCC
CGCGTCGGCGCCTCGTTCAGCCAACGCCTGCGCTCGCTCGAGTTCCGTAAGGTCGAGTCCTTCGGGCCGGCCGAGATGAG
CAGATTCTCCACGGCCTCGCTCATCACCCGTTCCACCAACGACATCACGCAGATCCAGATGTTCATCACGATGGGAGTCC
TGTTGGTCTTCCGCGCTCCGATCATGGCGGTCTGGGCGGTGTGCAAGATCGCAGGTAAGGGCTTCCAATGGACGCTCGCC
ACAGGGATCGCCACCGTCGCGATGCTGGTGTTCGTCGTCATCATCATGACTCTGGTCATGCCGAAGTTCCGCTCGATGCA
GCGCCTGACCGACAATATCAACGCCGTCGCCCGCGAGAACCTGACCGGCCTGCGCGTCGTCCGCGCCTATAACGCCGAGG
ACTATCAGGAGGCCAAGTTCGCCCGCGTCAATGACGACCTGACCCGCACGCAACTGTTCACCACCCGCGCGATGGCCGCG
ATGATTCCGGTCATGTCCAGCGTGATGAACGGGCTGGGCCTGGCGATTTACTGGATCGGCGCCTACCTCATCAAGGACGC
CGCGCTGCCGGCCGACAAGCTTACCGATTTTTCGAATATGGTCGTCTTTTCCAGCTACGCGATGCAGGTCATCATGGCGT
TCCTGCTCCTAAGCATGGTCTTCGTACTGTGGCCGCGCGCCGACGTCTCCGCCCAGCGCGTCATGGAGGTGTTGGACACC
GAGCCTTCCGTCAAGTCTGGTTCCGTGCGCGAGGGCAAACCCGGCGAGACCGGCACCGTCGAGTTCCGCAACGTCGGCTT
CGCCTACCCGGACACCCGCGACGAGATGCTGCGCGGCGTCAGCTTCACCGCCCGCCGTGGCCAGACCGTTGCCTTCATCG
GCTCCACCGGTTCGGGCAAATCCACGCTGGTCAATCTCGTGCCGCGCTTCTATGACACCACCGAGGGCGAGGTGTTGATC
GACGGCGTCAACGTCCGTGATTACGACATCAAGGCGCTGCGCGACAAGATCGGTTACGTGCCACAGCAATCGGTGATGTT
CAAGGGCACTGTGGCGTCCAACGTCAGCTACGGCGACCAGCCCGGAGATGCCGAAACCGTCGAGGTGGCCGACACCTCAA
CCGCGGCTGGGCGCAAGCGCGAATTGGAGTTGATTGCCGGTGAAAGCCAGCGCGACGAGCTGAGCGCCGAGCAAAAAGCC
GATGTCCGCGCCGCCAGTGAGGTGGCGCAGGCCGGCGAGTTCGTCGACCGCATGGAAGGCGGCTACGATGCGCCGATTGC
GCAAGGCGGCTCCAACGTCTCCGGCGGCCAGAAGCAGCGGCTTTCCATCGCCCGCGCCGTCTACCGCCACCCCGAGATCA
TGGTCTTCGATGACTCGTTCAGCGCGCTCGATTTCAAGACCGACCGTGCGGTGCGCGACGCCCTGAAGGAGCACGCGGCC
GACGCGACCAAGCTCATCGTTGCCCAGCGCGTCGGCACCATCATGGACGCCGACCAGATCGTCGTGCTCGATGATGGCAA
GGTCGTCGGCCTCGGCACGCACAAGGAGCTGCTCGCCACCTGCGAGGTCTACCAGCAGATCGCCGAGTCCCAGCTGAGTC
CCGACGAGCTGGCTGCGTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(61-294)

ABC transporter (ABC_tran)

(357-539)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

49.363

100

0.501