Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OZX64_RS08555 Genome accession   NZ_CP113929
Coordinates   2322644..2324479 (-) Length   611 a.a.
NCBI ID   WP_277172748.1    Uniprot ID   -
Organism   Bifidobacterium sp. ESL0704     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2317644..2329479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX64_RS08550 (OZX64_08560) - 2321123..2322103 (-) 981 WP_277172745.1 class C sortase -
  OZX64_RS08555 (OZX64_08565) rcrQ 2322644..2324479 (-) 1836 WP_277172748.1 ABC transporter ATP-binding protein Regulator
  OZX64_RS08560 (OZX64_08570) rcrP 2324812..2326671 (-) 1860 WP_277172750.1 ABC transporter ATP-binding protein Regulator
  OZX64_RS08565 (OZX64_08575) - 2326868..2327434 (-) 567 WP_277175035.1 MarR family transcriptional regulator -
  OZX64_RS08570 (OZX64_08580) - 2327661..2327864 (-) 204 WP_277146035.1 hypothetical protein -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 66742.28 Da        Isoelectric Point: 6.5050

>NTDB_id=763588 OZX64_RS08555 WP_277172748.1 2322644..2324479(-) (rcrQ) [Bifidobacterium sp. ESL0704]
MPRMRGPVEKPADFGGVMAKLVRYCKKYVPAIVVALVLGAAGTICQIIGPDQLKNMTNAIAKGLPAMVHGKPVMGAVDMG
EVTRIAWLLVGLYAGYAVLGYVQQWMMATVTQRVGQSLRRSISDKINKLPLKYFDKTSYGDVLSRITNDVDAIGQTLGQS
LGMLITSVTLFVGSLAMMFYNNVIMTVCAIVVSILGIVVMMLIMKYSQKYFAQQQLALGEVNGHVEEMYAGHTVVKAYNG
EADSIRRFEKYNNDLYDSAWKSQFLSGLMGPMMNMIGNLSFGAVCIVGGALAIDGKIEFGVIVAFMMYVRLFTQPLSQFA
QAFQNLQRCAAASERVFGFLEEPEMSDESKKPALLGRDPKTGKPARVRGDVEFKDVNFGYEPGKTIIHDFSASVKAGQKV
AIVGPTGAGKSTMVNLLMRFYDIDGGSMTIDGIDTSTVPRANVHEQFSMVLQDTWVFHGTVRENVAYAKKGVTDEQIEQA
CKAVGLDHYVRSLPQGYDTVLDDNTSLSAGQRQLLTIARAMVQDAPILILDEATSSVDTRTEELIQQAMDALTVGRTSFV
IAHRLSTIKDADMILVMNHGDIVERGTHGELLAAGGFYADLYNSQFSELVD

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=763588 OZX64_RS08555 WP_277172748.1 2322644..2324479(-) (rcrQ) [Bifidobacterium sp. ESL0704]
ATGCCAAGAATGAGGGGACCGGTCGAGAAGCCGGCCGATTTCGGCGGAGTGATGGCCAAGCTGGTGCGGTACTGCAAGAA
GTACGTGCCCGCTATCGTCGTCGCGCTTGTGCTGGGTGCCGCCGGCACTATCTGCCAGATCATCGGGCCTGACCAGCTGA
AGAACATGACCAACGCCATCGCCAAGGGACTGCCCGCCATGGTGCACGGCAAGCCGGTGATGGGCGCGGTCGACATGGGC
GAGGTCACGCGCATCGCGTGGCTGCTGGTCGGTCTGTACGCGGGGTACGCGGTGCTGGGCTACGTCCAGCAGTGGATGAT
GGCCACGGTCACCCAGCGCGTCGGCCAGAGCCTGCGCCGCTCGATTTCCGACAAGATCAACAAGCTGCCGCTCAAGTATT
TCGACAAGACCAGCTATGGCGACGTGCTCTCGCGCATCACCAACGACGTCGACGCCATCGGCCAGACCCTGGGCCAGTCG
CTGGGCATGCTGATCACCTCGGTCACGCTTTTCGTCGGCTCGCTGGCGATGATGTTCTACAACAACGTCATCATGACCGT
CTGCGCCATCGTGGTCTCGATTCTGGGCATCGTGGTGATGATGCTCATCATGAAATACTCGCAGAAGTACTTCGCCCAGC
AGCAACTCGCGCTCGGCGAGGTTAACGGCCATGTCGAGGAGATGTACGCCGGCCACACCGTCGTCAAGGCCTACAACGGT
GAGGCCGACTCCATCCGCCGCTTCGAGAAGTACAACAACGACCTCTACGATTCCGCGTGGAAGAGCCAGTTCCTCTCCGG
CCTGATGGGCCCGATGATGAACATGATCGGCAACCTGAGCTTCGGCGCGGTCTGCATTGTGGGCGGGGCGCTCGCCATCG
ACGGCAAGATCGAGTTCGGCGTCATCGTGGCCTTCATGATGTACGTCCGTCTCTTCACCCAGCCGCTTTCGCAGTTCGCA
CAGGCCTTCCAGAACCTGCAGCGTTGCGCCGCCGCATCCGAGCGCGTCTTCGGCTTCCTCGAGGAGCCCGAGATGAGCGA
CGAGAGCAAGAAGCCCGCGTTGCTCGGCCGCGACCCGAAGACCGGCAAGCCCGCGCGTGTGCGTGGCGACGTCGAATTCA
AGGATGTCAACTTCGGCTACGAGCCCGGCAAGACGATTATTCACGACTTCTCTGCGTCGGTGAAGGCGGGCCAGAAAGTC
GCCATCGTCGGCCCGACCGGGGCCGGCAAATCCACCATGGTCAATCTGCTGATGCGCTTCTACGACATCGACGGCGGCTC
CATGACCATCGACGGCATCGACACCTCCACCGTGCCGCGAGCCAACGTACACGAGCAGTTCTCGATGGTGTTGCAGGACA
CGTGGGTCTTCCATGGCACCGTGCGCGAAAATGTCGCCTATGCCAAGAAAGGCGTCACCGATGAGCAGATCGAGCAGGCG
TGCAAGGCCGTCGGGCTCGATCATTACGTGCGCTCGCTGCCGCAGGGCTACGACACCGTCCTCGACGACAACACCTCGCT
TTCGGCCGGCCAGCGCCAGTTGCTGACCATCGCCCGCGCGATGGTGCAGGACGCGCCAATCCTGATCTTGGACGAGGCCA
CCTCGTCGGTCGACACCCGCACCGAGGAGCTGATTCAGCAGGCGATGGACGCGCTGACGGTGGGCCGCACGAGCTTCGTG
ATTGCGCACCGCCTCTCGACCATCAAGGACGCGGACATGATCCTGGTGATGAACCACGGCGACATCGTCGAGCGCGGTAC
CCACGGCGAGTTGTTGGCTGCCGGCGGTTTCTACGCCGACCTCTACAACAGCCAGTTCTCCGAGTTGGTGGATTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(35-316)

ABC transporter (ABC_tran)

(388-535)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.933

97.381

0.506