Detailed information NTG0763573

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QMW19_RS05465
• Genome accession: NZ_CP125731
• Coordinates: 1117482..1118474 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain GYB01
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1112482..1123474

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QMW19_RS05435 (QMW19_05435)	ispD	1112543..1113253 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QMW19_RS05440 (QMW19_05440)	ispF	1113253..1113732 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QMW19_RS05445 (QMW19_05445)	truD	1113729..1114778 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QMW19_RS05450 (QMW19_05450)	surE	1114759..1115520 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QMW19_RS05455 (QMW19_05455)	pcm	1115514..1116140 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QMW19_RS05460 (QMW19_05460)	nlpD	1116325..1117419 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QMW19_RS05465 (QMW19_05465)	rpoS	1117482..1118474 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QMW19_RS05470 (QMW19_05470)	ygbN	1118568..1119932 (-)	1365	WP_000104441.1	GntP family transporter	-
QMW19_RS05475 (QMW19_05475)	ygbM	1120021..1120797 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
QMW19_RS05480 (QMW19_05480)	ygbL	1120802..1121440 (-)	639	WP_001278994.1	aldolase	-
QMW19_RS05485 (QMW19_05485)	otnK	1121437..1122699 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=763573 QMW19_RS05465 WP_000081550.1 1117482..1118474(+) (rpoS) [Escherichia coli strain GYB01]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=763573 QMW19_RS05465 WP_000081550.1 1117482..1118474(+) (rpoS) [Escherichia coli strain GYB01]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715