Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OZX67_RS09120 Genome accession   NZ_CP113925
Coordinates   2449745..2451604 (-) Length   619 a.a.
NCBI ID   WP_277142799.1    Uniprot ID   -
Organism   Bifidobacterium sp. ESL0728     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2444745..2456604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX67_RS09110 (OZX67_09110) - 2445789..2447270 (+) 1482 WP_277142795.1 ATP-binding protein -
  OZX67_RS09115 (OZX67_09115) rcrQ 2447668..2449503 (-) 1836 WP_277142797.1 ABC transporter ATP-binding protein Regulator
  OZX67_RS09120 (OZX67_09120) rcrP 2449745..2451604 (-) 1860 WP_277142799.1 ABC transporter ATP-binding protein Regulator
  OZX67_RS09125 (OZX67_09125) - 2451777..2452289 (-) 513 WP_277142801.1 MarR family transcriptional regulator -
  OZX67_RS09130 (OZX67_09130) - 2452501..2452704 (-) 204 WP_277142805.1 hypothetical protein -
  OZX67_RS09135 (OZX67_09135) - 2453099..2454640 (-) 1542 WP_348519627.1 amino acid permease -
  OZX67_RS09140 (OZX67_09140) - 2455193..2455465 (+) 273 WP_277142809.1 hypothetical protein -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 68132.76 Da        Isoelectric Point: 5.3745

>NTDB_id=763557 OZX67_RS09120 WP_277142799.1 2449745..2451604(-) (rcrP) [Bifidobacterium sp. ESL0728]
MLRISKYLSKTEIGQMLLSLAFIAGQVFFDLKLPDYMSKVTALVETPGSEMIDIFKEGGKMLLVSLGSVICSIVVGYFMA
RVGASFSQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDITQIQMFITMGLLLVFRAPIMAVWAIFKIAGKGFEWTVA
TAIATAVMLVFVIIIMIAVMPKFRSMQRLTDNINAVARENLTGLRVVRAYNAEDYQENKFAKVNDDLTNTQLFTTRAMAA
MNPVMSSVMNGLGLAIYWIGAYLIKDAKLPATKLTDFSNMVVFSSYAMQVIMAFLLLSMVFVLWPRADVSAQRVLEVLDT
EPSVKNGTLTKGKPGETGTVEFRNVGFAYPDTRDEMLKDISFTAKKGQTVAFIGSTGSGKSTLVNLVPRFYDATEGEVLI
DGVNVKDYDIKDLRDKIGYVPQQSVMFKGTVASNVSYGDRPGDAETVEVADTSTAKGRKRELALIAGEDKRDELTPEQMA
NVRESSEVAQADEFIERMDGEYEAPIAQSGSNVSGGQKQRLSIARAVYRHPEIMVFDDSFSALDFKTDRAVRDALKKDAA
ESTKLIVAQRVGTIMDADTIVVLDDGKVVGEGTHKELLKTCKVYKEIAESQLSPDELAA

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=763557 OZX67_RS09120 WP_277142799.1 2449745..2451604(-) (rcrP) [Bifidobacterium sp. ESL0728]
ATGCTTCGCATCAGCAAATATCTCTCCAAAACGGAGATCGGGCAGATGCTGCTGAGCCTTGCGTTCATCGCAGGGCAGGT
CTTTTTCGACCTGAAGCTGCCGGACTACATGTCAAAGGTCACGGCGCTCGTCGAGACGCCGGGCAGCGAGATGATCGACA
TCTTCAAAGAGGGCGGCAAGATGCTGCTCGTCTCTCTGGGCTCGGTGATCTGTTCCATCGTCGTCGGCTACTTCATGGCC
CGCGTCGGCGCCTCGTTCAGCCAGCGTCTGCGTTCGCTTGAGTTCCGCAAGGTCGAATCCTTCGGCCCGGCCGAGATGAG
CAAGTTCTCCACGGCCTCGCTGATCACCCGCTCCACCAACGACATCACGCAAATCCAGATGTTCATCACCATGGGCTTGC
TGCTGGTCTTCCGAGCGCCGATTATGGCCGTCTGGGCCATTTTCAAGATTGCCGGTAAGGGCTTCGAGTGGACGGTGGCC
ACCGCCATCGCGACTGCGGTCATGCTGGTTTTCGTCATTATCATCATGATTGCGGTGATGCCGAAGTTCCGTTCGATGCA
GCGCCTGACCGATAACATCAACGCCGTCGCCCGCGAGAACCTCACCGGCCTGCGCGTCGTGCGCGCCTACAACGCCGAGG
ATTATCAGGAAAACAAATTCGCCAAGGTCAACGACGATTTGACCAATACCCAACTGTTCACCACCCGCGCGATGGCCGCG
ATGAACCCGGTCATGTCGAGCGTGATGAACGGCCTGGGGCTGGCGATCTACTGGATCGGCGCCTACCTCATCAAGGACGC
GAAGCTGCCGGCCACCAAACTCACCGACTTCTCGAACATGGTCGTCTTCTCCAGCTACGCGATGCAGGTCATCATGGCCT
TCCTCCTCTTGAGCATGGTCTTCGTGCTCTGGCCGCGCGCCGACGTCTCCGCCCAGCGTGTGCTGGAAGTGCTCGATACC
GAGCCGAGCGTCAAGAACGGAACGCTGACGAAAGGCAAGCCCGGCGAGACCGGCACGGTCGAATTCCGCAACGTTGGCTT
TGCCTATCCGGATACCCGCGACGAAATGCTCAAAGACATCAGCTTCACCGCGAAGAAGGGGCAGACCGTCGCTTTCATCG
GTTCCACCGGTTCCGGCAAGTCGACGCTCGTCAACCTCGTGCCGCGTTTCTACGACGCCACCGAGGGTGAGGTCTTGATC
GACGGCGTCAACGTCAAGGACTACGACATCAAGGATCTGCGCGACAAGATCGGTTACGTGCCGCAGCAGTCGGTGATGTT
CAAAGGCACCGTCGCGTCGAATGTCAGCTACGGCGACCGGCCCGGCGATGCGGAAACCGTCGAGGTGGCCGACACGTCAA
CCGCCAAGGGCCGCAAGCGCGAACTGGCGCTGATCGCCGGCGAAGACAAGCGCGACGAACTGACGCCCGAGCAAATGGCG
AACGTCCGTGAGTCCAGCGAGGTCGCCCAGGCCGACGAGTTCATCGAGCGCATGGACGGGGAGTATGAAGCCCCCATCGC
GCAAAGCGGTTCCAACGTCTCCGGTGGTCAGAAGCAGCGGCTTTCCATCGCCCGTGCCGTCTACCGTCACCCGGAGATTA
TGGTCTTCGACGATTCGTTCAGCGCGCTCGACTTCAAAACCGACCGTGCGGTGCGTGACGCCCTGAAGAAAGACGCCGCC
GAGTCCACCAAGCTCATCGTCGCCCAGCGTGTGGGCACGATCATGGACGCCGACACCATCGTGGTGCTCGACGACGGCAA
GGTCGTAGGCGAAGGCACGCACAAGGAACTACTCAAGACCTGCAAGGTATATAAGGAGATCGCCGAGTCCCAGCTGAGCC
CCGACGAACTGGCCGCGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(357-539)

ABC transporter transmembrane region (ABC_membrane)

(61-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

49.363

100

0.501