Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OZX67_RS09115 Genome accession   NZ_CP113925
Coordinates   2447668..2449503 (-) Length   611 a.a.
NCBI ID   WP_277142797.1    Uniprot ID   -
Organism   Bifidobacterium sp. ESL0728     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2442668..2454503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX67_RS09110 (OZX67_09110) - 2445789..2447270 (+) 1482 WP_277142795.1 ATP-binding protein -
  OZX67_RS09115 (OZX67_09115) rcrQ 2447668..2449503 (-) 1836 WP_277142797.1 ABC transporter ATP-binding protein Regulator
  OZX67_RS09120 (OZX67_09120) rcrP 2449745..2451604 (-) 1860 WP_277142799.1 ABC transporter ATP-binding protein Regulator
  OZX67_RS09125 (OZX67_09125) - 2451777..2452289 (-) 513 WP_277142801.1 MarR family transcriptional regulator -
  OZX67_RS09130 (OZX67_09130) - 2452501..2452704 (-) 204 WP_277142805.1 hypothetical protein -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 67153.01 Da        Isoelectric Point: 7.4980

>NTDB_id=763556 OZX67_RS09115 WP_277142797.1 2447668..2449503(-) (rcrQ) [Bifidobacterium sp. ESL0728]
MPRMRGPVEKPADFGGVMLKLVRYCRKYLPVIIIALVLGAAGTICQIIGPDQLKNMTNAIAKGLPALVHGKPVMGAVDMG
EVTRIAWLLVGLYAGYAILGYAQHWMMATVTQRIGQSLRKSISDKINKLPLKYFDHTSFGDVLSRITNDVDAIGQTLGQS
LGMLITSITLFVGSLVMMFYNNVLMTLCAIGVSILGVVIMMLIMHYSQKYFARQQIALGDVNGHVEEMYSGHIVVKAYNG
EADSIRRFEKYNNDLYDSAWKSQFLSGLMGPMMNMIGNLSFVAVCIVGGALAINGKIEFGVIVAFMMYVRLFTQPLSQFA
QAFQNLQRCAAASERVFGFLEEPEMSDESKKPALLGRDPKTGKPTRVRGDVEFKDVSFGYEPGKPIIHDFSASVKAGQKV
AIVGPTGAGKSTMVNLLMRFYDIDGGAMYIDGIDTSTVPRANVHQQFSMVLQDTWVFRGTVKENVAYAKKGVTDQQIEDA
CKAVGLDHYVRSLPQGYDTVLDDNSSLSQGQRQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDDLTVGRTSFV
IAHRLSTIKDADMILVMNHGDIVERGTHDELLKKGGFYADLYNSQFSTLVA

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=763556 OZX67_RS09115 WP_277142797.1 2447668..2449503(-) (rcrQ) [Bifidobacterium sp. ESL0728]
ATGCCAAGAATGAGGGGACCGGTCGAAAAGCCGGCTGATTTCGGCGGAGTGATGCTCAAACTGGTGCGTTACTGCCGCAA
ATACCTGCCCGTCATCATCATTGCGCTCGTCTTGGGCGCCGCCGGCACCATCTGCCAGATCATCGGGCCGGATCAACTGA
AGAACATGACCAACGCCATCGCCAAGGGCCTGCCCGCCCTGGTGCACGGCAAGCCCGTGATGGGCGCGGTCGATATGGGT
GAGGTCACGCGCATCGCATGGCTTCTGGTCGGTCTCTACGCCGGCTACGCCATCTTGGGCTACGCGCAGCACTGGATGAT
GGCCACCGTTACCCAGCGCATCGGCCAAAGCCTGCGCAAGTCGATCTCCGACAAGATCAACAAGCTGCCGCTCAAGTACT
TCGACCACACCAGCTTCGGCGACGTGCTCTCGCGCATCACCAACGACGTCGACGCCATAGGCCAGACGCTGGGGCAGTCG
TTGGGCATGCTGATCACCTCGATCACGCTCTTCGTCGGCTCGCTCGTGATGATGTTCTACAACAACGTGCTCATGACGCT
GTGCGCGATTGGAGTTTCGATTCTTGGTGTCGTCATCATGATGCTCATCATGCACTATTCCCAGAAATACTTCGCCCGCC
AGCAGATTGCGCTCGGCGACGTCAACGGTCACGTGGAAGAAATGTACTCCGGCCATATCGTCGTCAAGGCGTACAACGGC
GAGGCCGACTCCATCCGCCGCTTTGAGAAGTACAATAACGACCTCTACGATTCCGCGTGGAAGAGCCAGTTCCTCTCCGG
CCTGATGGGCCCGATGATGAACATGATCGGCAACCTGAGCTTCGTCGCGGTCTGCATTGTCGGCGGTGCGCTCGCCATCA
ACGGCAAGATCGAGTTCGGCGTCATCGTGGCCTTCATGATGTACGTCCGCCTCTTCACCCAGCCGCTTTCGCAGTTCGCG
CAGGCCTTCCAGAACCTGCAGCGTTGCGCCGCCGCTTCCGAACGCGTCTTCGGCTTCCTTGAGGAGCCCGAGATGAGCGA
CGAGTCCAAGAAGCCCGCGCTGCTCGGCCGCGACCCCAAGACCGGCAAGCCCACGCGCGTGCGTGGCGACGTCGAGTTCA
AGGACGTCAGCTTCGGCTATGAGCCCGGAAAGCCGATCATTCACGACTTCTCGGCGTCCGTGAAGGCCGGCCAGAAGGTC
GCCATCGTCGGCCCGACCGGTGCCGGCAAGTCCACCATGGTCAACCTCCTGATGCGTTTCTACGACATCGACGGCGGGGC
CATGTATATCGACGGCATCGACACCTCCACGGTTCCCCGCGCCAACGTGCACCAGCAGTTCTCGATGGTCTTGCAGGACA
CGTGGGTCTTCCGCGGAACGGTCAAGGAGAACGTCGCCTACGCCAAGAAGGGCGTCACCGACCAGCAGATCGAGGACGCT
TGCAAGGCCGTCGGGCTTGACCATTACGTGCGTTCGCTGCCGCAGGGGTACGACACCGTGCTTGACGACAATTCCTCGCT
TTCGCAGGGCCAGCGTCAGTTGCTGACGATCGCCCGCGCGATGGTGCAGGATGCTCCGATCCTGATTTTGGACGAGGCCA
CCTCGTCGGTCGATACCCGTACGGAGGAGCTGATTCAGAAGGCGATGGACGACCTGACCGTGGGCCGCACGAGCTTCGTG
ATTGCGCACCGTCTCTCGACCATCAAGGACGCCGACATGATCCTGGTGATGAACCACGGCGACATCGTCGAACGTGGCAC
GCATGACGAGCTGCTGAAGAAGGGTGGCTTCTACGCCGACCTCTACAACAGCCAGTTCTCGACGCTGGTCGCGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(32-316)

ABC transporter (ABC_tran)

(388-535)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.703

96.89

0.511