Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   OZX69_RS08190 Genome accession   NZ_CP113921
Coordinates   1705386..1707191 (+) Length   601 a.a.
NCBI ID   WP_277143069.1    Uniprot ID   -
Organism   Lactobacillus sp. ESL0731     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1700386..1712191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX69_RS08165 (OZX69_08165) - 1700611..1701663 (+) 1053 WP_277145115.1 aspartate-semialdehyde dehydrogenase -
  OZX69_RS08170 (OZX69_08170) - 1702233..1702514 (-) 282 WP_277143063.1 hypothetical protein -
  OZX69_RS08175 (OZX69_08175) - 1702538..1703428 (-) 891 WP_277143065.1 hypothetical protein -
  OZX69_RS08180 (OZX69_08180) - 1703613..1703984 (-) 372 WP_277132065.1 hypothetical protein -
  OZX69_RS08185 (OZX69_08185) - 1704003..1705226 (-) 1224 WP_277143067.1 LCP family protein -
  OZX69_RS08190 (OZX69_08190) pepF 1705386..1707191 (+) 1806 WP_277143069.1 oligoendopeptidase F Regulator
  OZX69_RS08195 (OZX69_08195) - 1707474..1707956 (-) 483 WP_277143071.1 hypothetical protein -
  OZX69_RS08200 (OZX69_08200) - 1707963..1708310 (-) 348 WP_277143073.1 hypothetical protein -
  OZX69_RS08205 (OZX69_08205) - 1708429..1709577 (-) 1149 WP_277143075.1 ArgE/DapE family deacylase -
  OZX69_RS08210 (OZX69_08210) - 1709589..1710338 (-) 750 WP_277143078.1 amino acid ABC transporter ATP-binding protein -
  OZX69_RS08215 (OZX69_08215) - 1710331..1711830 (-) 1500 WP_277143080.1 ABC transporter substrate-binding protein/permease -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68360.10 Da        Isoelectric Point: 4.6141

>NTDB_id=763552 OZX69_RS08190 WP_277143069.1 1705386..1707191(+) (pepF) [Lactobacillus sp. ESL0731]
MTIPKRTAVPEELKWDLTRVFKSDTDWEHEYTTVKTEIQTLSNLQANFAKSGHDLYDSLTKILVVGRKLEKLYAYATLSS
DVDTSNAHYLGYVAQIQSLASQFEAVTSFINPAILGISEAELKQFKQDKPQLKDYDHWLDQITQMRPHTLSAKEEKLVAD
AGDAMGVSENTFNVLTNSDMEYGYVQNDDGEMVQLSDGLYSLLIQSQNRDVRQDAFDSMYATYGQFENSLASTLSGVVKE
HNYNAQVHNYDSARSAALHENGVPTVVYDTLINEVDSHLDLLHRYVALRKKILGLDDLQMWDMYVPLTGKPAMAYTFDEA
KKEAKKALAPLGADYLKHVDYIFNNRVIDVVESQNKVTGAYSGGSYDTDPYELLNWEDNIDSLYTLVHETGHSVHSMYTR
ETQPYVYGDYPIFVAEIASTTNENILTEYFLDHVTDPKTRAFVLNYYLDSFKGTLFRQTQFAEFEQYVHEQDAKGEPLTA
DRLNEFYGQLNQRYYGDSVEPGGDIAKEWARIPHFYYNFYVYQYATGFAAATALANNVVHGTDAQREAYLGYLKSGSSDY
PVEIMKRAGVDMTKSAYLEDAFATFAKRLDELEKIIANNFK

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=763552 OZX69_RS08190 WP_277143069.1 1705386..1707191(+) (pepF) [Lactobacillus sp. ESL0731]
ATGACAATTCCAAAAAGAACCGCCGTTCCTGAAGAACTCAAATGGGATTTAACCCGCGTGTTTAAATCTGATACTGACTG
GGAACACGAATATACAACAGTTAAAACAGAAATACAAACCTTAAGCAATTTACAGGCGAATTTTGCCAAATCAGGACATG
ATTTATATGATAGCCTAACTAAGATTTTAGTAGTTGGTCGCAAGCTGGAAAAACTCTACGCCTATGCGACATTATCAAGT
GACGTCGACACGAGTAACGCCCACTATTTGGGGTATGTTGCACAAATTCAATCCTTAGCCAGTCAATTTGAGGCCGTGAC
GTCCTTTATCAATCCCGCAATTTTAGGTATTTCAGAAGCAGAATTAAAGCAGTTTAAGCAAGACAAGCCGCAACTCAAAG
ACTACGACCACTGGCTGGACCAGATTACGCAAATGCGGCCACATACATTGTCTGCCAAAGAAGAAAAATTAGTGGCAGAC
GCTGGTGACGCAATGGGCGTTTCCGAGAACACCTTTAATGTTCTCACCAATTCCGACATGGAATATGGCTACGTCCAAAA
CGATGATGGCGAGATGGTGCAGCTCTCTGATGGTTTATATTCACTATTAATCCAATCGCAAAATCGTGACGTGCGCCAAG
ATGCCTTTGACTCAATGTACGCAACTTACGGTCAATTCGAAAATTCGCTGGCTTCAACTCTTTCCGGCGTTGTTAAGGAA
CACAATTACAACGCGCAGGTGCATAATTATGACTCTGCACGCAGCGCAGCTTTACACGAAAATGGTGTACCAACTGTGGT
TTACGACACTTTAATTAACGAAGTTGACTCCCACCTCGACTTGCTCCACCGCTACGTTGCTTTACGTAAAAAGATCCTCG
GCTTAGATGATTTACAAATGTGGGACATGTACGTGCCATTGACTGGTAAGCCGGCAATGGCATACACCTTTGATGAAGCT
AAGAAAGAAGCCAAAAAGGCCTTGGCTCCACTAGGTGCTGACTACCTAAAGCACGTCGACTATATTTTCAACAATCGTGT
AATTGATGTCGTTGAATCACAAAATAAGGTCACAGGAGCATATTCTGGTGGCTCTTACGATACTGACCCTTACGAACTGC
TCAATTGGGAAGACAACATCGACTCACTCTACACACTGGTTCACGAAACCGGCCACTCTGTTCACAGCATGTACACCCGA
GAAACTCAACCTTACGTGTACGGTGACTACCCGATTTTTGTTGCGGAAATCGCATCAACTACTAACGAAAACATTCTAAC
AGAATACTTTTTAGATCATGTGACTGACCCCAAGACGCGGGCCTTTGTCCTTAACTATTACCTTGACTCCTTCAAGGGCA
CACTCTTCAGACAGACACAATTTGCGGAATTTGAACAATATGTTCATGAGCAAGATGCCAAGGGTGAACCGCTGACTGCT
GACCGCCTTAACGAATTTTACGGTCAATTGAACCAACGTTATTATGGCGACAGTGTTGAGCCAGGTGGCGATATTGCCAA
GGAATGGGCACGCATCCCCCACTTTTATTACAACTTCTACGTTTATCAATACGCCACTGGCTTTGCGGCTGCAACTGCCC
TTGCCAACAATGTTGTTCACGGAACAGACGCGCAGCGTGAAGCCTATCTTGGTTACCTCAAGTCTGGTTCAAGCGATTAC
CCTGTAGAAATCATGAAGCGCGCCGGCGTTGACATGACTAAGAGCGCTTATTTGGAAGACGCATTTGCCACTTTTGCCAA
GCGCTTGGATGAGCTTGAGAAAATTATCGCAAATAATTTCAAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-181)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.746

98.336

0.489