Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OZX70_RS08570 Genome accession   NZ_CP113920
Coordinates   2252388..2254247 (-) Length   619 a.a.
NCBI ID   WP_277180768.1    Uniprot ID   -
Organism   Bifidobacterium sp. ESL0732     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2247388..2259247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX70_RS08565 (OZX70_08565) rcrQ 2250413..2252248 (-) 1836 WP_277180766.1 ABC transporter ATP-binding protein Regulator
  OZX70_RS08570 (OZX70_08570) rcrP 2252388..2254247 (-) 1860 WP_277180768.1 ABC transporter ATP-binding protein Regulator
  OZX70_RS08575 (OZX70_08575) - 2254514..2255041 (-) 528 WP_277182191.1 MarR family winged helix-turn-helix transcriptional regulator -
  OZX70_RS08580 (OZX70_08580) - 2255653..2255856 (-) 204 WP_277146035.1 hypothetical protein -
  OZX70_RS08585 (OZX70_08585) - 2256251..2257816 (-) 1566 WP_277180770.1 amino acid permease -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 67975.39 Da        Isoelectric Point: 5.3492

>NTDB_id=763537 OZX70_RS08570 WP_277180768.1 2252388..2254247(-) (rcrP) [Bifidobacterium sp. ESL0732]
MLRISKYLSKTEIGQMLLSLAFIAGQVFFDLKLPDYMSKVTALVETPGSRMADIWKEGGKMLLVSLGSVICAIAVGYFMA
RVGASFSQRLRSLEFRKVESFGPAEMNKFSTASLITRSTNDITQIQMFITMGVLLVFRAPIMAVWAIFKIAGKGFEWTVA
TAAATAIMLVFVIIIMIMVMPKFRSMQRLTDNINAVARENLTGLRVVRAYNAEDYQEAKFAHVNDELTNTQLFTTRAMAA
MNPVMSSVMNGLGLAIYWIGAYLIKDAALPADKLTDFSNMVVFSSYAMQVIMAFLLLSMVFVLWPRADVSAQRVLEVLDT
EPSVKSGTLTQGKPGETGTVEFRNVGFAYPDTREEMLQNISFTARKGQTVAFIGSTGSGKSTLVNLVPRFYDATEGEVLV
DGVNVKDYDIKDLRDKIGYVPQQSVMFKGTVASNVSYGDRPGDAETVEVADTSTAKGRKRELALIVGESERDELTPEQKA
NVREASEVAQASEFVDRMDGGYEAPIAQSGSNVSGGQKQRLSIARAVYRHPEIMVFDDSFSALDFKTDRAVRDALKKDAA
DSTKLIVAQRVGTIMDADQIVVLDDGKVVGQGTHKELLKTCEVYKEIAESQLTPDELAA

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=763537 OZX70_RS08570 WP_277180768.1 2252388..2254247(-) (rcrP) [Bifidobacterium sp. ESL0732]
ATGCTTCGCATCAGCAAATATCTCTCCAAAACGGAGATCGGGCAGATGCTGCTGAGCCTTGCGTTCATCGCAGGGCAGGT
CTTTTTCGACCTGAAGCTGCCGGACTACATGTCCAAGGTAACCGCGCTGGTCGAGACGCCGGGCAGCAGGATGGCGGATA
TCTGGAAAGAGGGCGGCAAGATGTTGCTCGTCTCTCTGGGCTCGGTCATCTGCGCCATCGCCGTCGGCTACTTCATGGCC
CGTGTGGGAGCATCGTTTAGCCAACGTCTGCGCTCGCTCGAGTTCCGCAAGGTCGAATCCTTCGGTCCGGCCGAGATGAA
CAAGTTCTCCACGGCCTCGCTGATCACCCGTTCCACAAACGACATCACCCAGATCCAGATGTTCATTACCATGGGCGTTT
TGCTGGTCTTCCGCGCGCCGATTATGGCTGTCTGGGCTATTTTCAAAATCGCGGGCAAAGGCTTTGAGTGGACGGTGGCC
ACGGCCGCTGCCACGGCAATCATGCTGGTTTTCGTCATTATCATCATGATTATGGTCATGCCGAAGTTCCGTTCGATGCA
GCGTTTGACCGATAATATCAACGCCGTGGCCCGCGAGAACCTGACCGGCCTGCGCGTCGTTCGCGCCTACAACGCCGAGG
ATTATCAGGAGGCCAAGTTCGCACACGTCAACGACGAACTGACCAATACCCAGCTCTTCACCACCCGCGCGATGGCCGCG
ATGAATCCCGTGATGTCGAGCGTGATGAACGGCTTGGGCCTTGCGATCTACTGGATCGGTGCCTACCTCATCAAGGACGC
GGCGCTGCCAGCCGACAAACTCACTGACTTCTCGAACATGGTCGTCTTCTCCAGCTATGCGATGCAGGTCATTATGGCCT
TCCTCCTCTTAAGCATGGTCTTCGTGCTCTGGCCGCGCGCCGACGTCTCCGCACAGCGCGTGCTGGAAGTGCTCGACACC
GAACCTAGCGTCAAGTCCGGAACATTGACACAAGGCAAGCCCGGCGAGACCGGAACTGTCGAGTTCCGCAACGTCGGTTT
CGCCTATCCCGACACCCGCGAGGAGATGCTTCAGAATATCAGCTTCACCGCGCGTAAAGGCCAGACCGTCGCCTTCATCG
GTTCCACCGGTTCCGGCAAATCCACGCTCGTCAACCTCGTGCCGCGTTTCTACGATGCCACCGAAGGCGAGGTTTTGGTC
GACGGAGTGAATGTAAAGGATTACGACATCAAGGACCTGCGCGACAAGATCGGTTATGTGCCGCAGCAATCGGTGATGTT
CAAGGGCACCGTCGCGTCCAACGTCAGCTACGGCGACCGGCCCGGCGACGCCGAAACCGTCGAGGTGGCCGATACCTCCA
CCGCCAAGGGCCGCAAGCGTGAGCTGGCGCTGATCGTCGGCGAAAGCGAGCGCGACGAACTGACGCCCGAGCAAAAAGCC
AATGTCCGCGAGGCAAGCGAGGTGGCACAGGCCAGCGAGTTCGTCGACCGTATGGACGGTGGCTACGAAGCGCCGATCGC
GCAGAGCGGCTCCAACGTCTCCGGTGGCCAGAAGCAGCGTCTTTCCATCGCGCGCGCCGTCTACCGCCACCCCGAAATCA
TGGTCTTCGACGACTCGTTCAGCGCGCTCGACTTCAAGACCGACCGTGCTGTTCGAGACGCTTTGAAGAAGGATGCCGCC
GATTCCACCAAGCTCATCGTCGCCCAGCGCGTCGGCACCATCATGGACGCCGACCAGATCGTCGTGCTCGACGACGGCAA
AGTGGTGGGCCAGGGCACGCACAAGGAGCTGCTCAAGACCTGCGAGGTCTACAAGGAGATCGCCGAGTCCCAGCTGACCC
CCGACGAGCTCGCCGCGTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(61-294)

ABC transporter (ABC_tran)

(357-539)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

49.204

100

0.499