Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OZX70_RS08565 Genome accession   NZ_CP113920
Coordinates   2250413..2252248 (-) Length   611 a.a.
NCBI ID   WP_277180766.1    Uniprot ID   -
Organism   Bifidobacterium sp. ESL0732     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2245413..2257248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX70_RS08560 (OZX70_08560) - 2246897..2249737 (-) 2841 WP_277180764.1 hypothetical protein -
  OZX70_RS08565 (OZX70_08565) rcrQ 2250413..2252248 (-) 1836 WP_277180766.1 ABC transporter ATP-binding protein Regulator
  OZX70_RS08570 (OZX70_08570) rcrP 2252388..2254247 (-) 1860 WP_277180768.1 ABC transporter ATP-binding protein Regulator
  OZX70_RS08575 (OZX70_08575) - 2254514..2255041 (-) 528 WP_277182191.1 MarR family winged helix-turn-helix transcriptional regulator -
  OZX70_RS08580 (OZX70_08580) - 2255653..2255856 (-) 204 WP_277146035.1 hypothetical protein -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 67251.20 Da        Isoelectric Point: 7.4989

>NTDB_id=763536 OZX70_RS08565 WP_277180766.1 2250413..2252248(-) (rcrQ) [Bifidobacterium sp. ESL0732]
MPRMRGPVEKPADFGGVMLKLVRYCRKYLPVIIIALVLGAAGTICQIIGPDQLKNMTNAIAKGLPALVHGKPVMGAVDMG
EVTRIAWLLVGLYVGYAVLNYIQHWMMATVTQRIGQSLRRSISDKINKLPLKYFDKTSYGDILSRITNDVDAIGQTLGQS
LGMLITSITLFFGSLIMMFYNNVIMTLCAIAVSILGIVVMMLIMHFSQKYFARQQIALGDVNGHVEEMYAGHTVVKAYNG
EADSIRRFEKYNNDLYDSAWKSQFLSGLMGPMMNMIGNLSFVAVCIVGGALAIDGKIEFGVIVAFMMYVRLFTQPLSQFA
QAFQNLQRCAAASERVFGFLEEPEMSDESKKPALLGRDPKTGKPVRVRGDVEFEHVSFGYEPGKPIIHDFSASVKAGQKV
AIVGPTGAGKSTMVNLLMRFYDIDGGKMTIDGIDTSTVPRSNVHEQFSMVLQDTWVFRGTVRENVAYAKKGVTDKQIEDA
CKAVGLDHYVRSLPQGYDTVLDDNSSLSAGQRQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTSFV
IAHRLSTIKDADMILVMNHGDIVERGTHDELLAKGGFYADLYNSQFSTLVA

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=763536 OZX70_RS08565 WP_277180766.1 2250413..2252248(-) (rcrQ) [Bifidobacterium sp. ESL0732]
ATGCCAAGAATGAGGGGACCGGTCGAGAAGCCGGCCGATTTCGGCGGAGTGATGCTCAAACTGGTGCGTTACTGCCGCAA
ATACCTGCCCGTCATCATCATCGCGCTCGTGCTGGGCGCGGCCGGCACCATCTGCCAGATCATCGGGCCGGACCAACTGA
AGAACATGACCAACGCCATCGCCAAAGGCCTGCCCGCCCTGGTGCACGGCAAGCCTGTGATGGGCGCGGTCGACATGGGC
GAGGTGACGCGCATCGCATGGCTGCTCGTCGGCCTGTACGTCGGCTACGCGGTGCTGAACTATATCCAGCACTGGATGAT
GGCCACCGTCACCCAGCGCATCGGCCAAAGCCTACGCCGTTCGATTTCCGACAAGATCAACAAGCTGCCACTCAAGTATT
TCGACAAGACCAGCTATGGAGACATACTCTCTCGTATTACAAACGACGTCGACGCCATCGGCCAGACGCTGGGACAGTCG
CTGGGCATGCTCATTACCTCGATCACGCTGTTCTTCGGCTCGCTGATCATGATGTTCTACAACAACGTCATCATGACGCT
GTGCGCCATTGCGGTCTCGATTCTGGGCATCGTGGTGATGATGCTCATCATGCACTTCTCGCAGAAGTACTTCGCACGCC
AGCAGATCGCGCTTGGCGACGTCAACGGCCACGTCGAGGAGATGTACGCCGGCCACACCGTCGTCAAGGCCTACAACGGC
GAGGCCGACTCCATCCGCCGCTTCGAGAAGTACAACAACGACCTCTACGATTCGGCGTGGAAGAGCCAGTTCCTCTCCGG
GCTGATGGGCCCGATGATGAACATGATCGGCAACCTGAGCTTCGTGGCCGTCTGCATCGTGGGCGGGGCGCTCGCCATCG
ACGGCAAGATCGAGTTCGGCGTCATCGTGGCGTTCATGATGTACGTGCGCCTCTTCACCCAGCCGCTCTCGCAGTTCGCG
CAGGCCTTCCAGAACCTGCAGCGTTGCGCCGCTGCTTCCGAGCGTGTCTTCGGCTTCCTCGAGGAGCCTGAGATGAGTGA
TGAGAGCAAGAAGCCCGCGCTGCTCGGCCGCGACCCGAAGACTGGCAAGCCCGTCCGTGTGCGCGGCGACGTTGAGTTCG
AGCACGTCAGCTTCGGTTACGAGCCCGGCAAGCCGATCATCCACGACTTCTCCGCGAGCGTCAAAGCTGGTCAGAAGGTC
GCCATCGTCGGCCCGACCGGTGCCGGCAAGTCCACCATGGTCAACTTGCTGATGCGCTTCTACGACATCGACGGCGGCAA
GATGACCATCGATGGTATCGACACCTCCACCGTCCCGCGCTCCAACGTGCACGAGCAGTTCTCGATGGTGCTGCAGGACA
CGTGGGTCTTCCGTGGCACGGTACGCGAAAACGTCGCCTACGCCAAGAAGGGCGTTACCGATAAGCAGATCGAGGACGCG
TGCAAGGCCGTTGGGCTCGACCATTACGTGCGCTCGCTGCCACAGGGATACGACACCGTGCTCGACGACAATTCCTCGCT
TTCGGCCGGGCAGCGGCAGCTGCTGACGATCGCCCGCGCGATGGTGCAGGACGCGCCGATCCTGATCTTGGACGAGGCCA
CTTCATCGGTCGACACCCGCACCGAGGAGCTGATCCAGAAGGCGATGGATGCGCTGACCGTGGGCCGCACGAGCTTCGTG
ATTGCGCATCGCCTCTCGACGATCAAGGACGCGGACATGATCCTGGTGATGAACCACGGCGACATCGTCGAGCGCGGCAC
CCACGACGAGCTGCTGGCCAAGGGTGGCTTCTATGCCGACCTCTACAACAGCCAGTTCTCGACTTTGGTTGCGTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(388-535)

ABC transporter transmembrane region (ABC_membrane)

(32-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.365

96.89

0.507