Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OZX72_RS08890 Genome accession   NZ_CP113918
Coordinates   2287288..2289147 (-) Length   619 a.a.
NCBI ID   WP_277158333.1    Uniprot ID   -
Organism   Bifidobacterium sp. ESL0769     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2282288..2294147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX72_RS08885 (OZX72_08885) rcrQ 2285309..2287144 (-) 1836 WP_277158332.1 ABC transporter ATP-binding protein Regulator
  OZX72_RS08890 (OZX72_08890) rcrP 2287288..2289147 (-) 1860 WP_277158333.1 ABC transporter ATP-binding protein Regulator
  OZX72_RS08895 (OZX72_08895) - 2289313..2289840 (-) 528 WP_277158334.1 transcriptional regulator -
  OZX72_RS08900 (OZX72_08900) - 2290156..2290359 (-) 204 WP_277142805.1 hypothetical protein -
  OZX72_RS08905 (OZX72_08905) - 2290756..2292294 (-) 1539 WP_277158335.1 amino acid permease -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 68081.89 Da        Isoelectric Point: 7.1474

>NTDB_id=763527 OZX72_RS08890 WP_277158333.1 2287288..2289147(-) (rcrP) [Bifidobacterium sp. ESL0769]
MLRISKYLSKTEIGQLLLSLAFIAGQVFFDLKLPDYMSKVTALVETPGSKMIEIWKEGGKMLLVSLGSVICAIVVGYFMA
RVGASFSQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDITQIQMFITMGLLLVFRAPIMAVWAIFKIAGKGFEWTVA
TAIATAIMLVFVIIIMIMVMPKFRSMQRLTDNINAVARENLTGLRVVRAYNAEDYQENKFAKVNDDLTNTQLFTTRAMAA
MNPVMSSVMNGLGLAIYWIGAYLIKDAALPATKLTDFSNMVVFSSYAMQVIMAFLLLSMVFVLWPRADVSAQRVLEVLDT
EPSVKSGTLTQGKPGETGTVEFKNVSFAYPDTREAMLKDINFTAKKGQTVAFIGATGSGKSSLVNLVPRFYDATEGEVLV
DGVNVKDYDIKDLRDKIGYVPQQSVMFKGTVASNVSYGDRPGDAETVEVADTSTAKGRKRELALIAGEDKRDELTPEQMT
NVRESSEVAQADEFVERMDGKYEAPIAQSGSNVSGGQKQRLSIARAVYRHPEIMVFDDSFSALDFKTDRAVRDALKKDAA
DSTKLIVAQRVGTIMDADTIVVLDDGKVVGKGTHKELLKTCKVYKEIAESQLSPDELAA

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=763527 OZX72_RS08890 WP_277158333.1 2287288..2289147(-) (rcrP) [Bifidobacterium sp. ESL0769]
ATGCTTCGCATCAGCAAATATCTCTCCAAAACCGAGATCGGGCAGCTGCTGCTGAGCCTTGCGTTCATCGCAGGGCAGGT
CTTTTTCGACCTGAAGCTGCCGGATTACATGTCGAAAGTCACGGCGCTGGTCGAGACGCCGGGTAGCAAGATGATTGAAA
TCTGGAAAGAGGGCGGCAAGATGCTGCTCGTCTCTCTGGGCTCGGTGATTTGCGCCATCGTCGTCGGCTACTTCATGGCC
CGTGTCGGCGCTTCGTTCAGCCAGCGTCTGCGCTCGCTTGAGTTCCGCAAGGTGGAATCCTTCGGGCCGGCCGAAATGAG
CAAGTTCTCCACGGCTTCACTCATTACCCGCTCCACCAACGACATCACGCAGATTCAGATGTTCATTACCATGGGCCTGC
TGCTGGTCTTCCGCGCGCCGATCATGGCCGTCTGGGCCATCTTCAAAATTGCCGGCAAAGGCTTCGAATGGACGGTTGCC
ACGGCCATCGCCACCGCGATCATGCTGGTTTTCGTCATTATCATCATGATCATGGTGATGCCGAAGTTCCGTTCGATGCA
GCGCCTGACCGATAACATCAACGCCGTCGCCCGTGAGAACCTGACCGGTCTGCGCGTCGTCCGCGCCTACAATGCCGAGG
ACTATCAGGAAAACAAGTTCGCCAAGGTCAACGACGATTTGACCAATACCCAGCTTTTCACCACCCGCGCGATGGCCGCG
ATGAACCCGGTCATGTCCAGCGTGATGAACGGACTTGGCCTGGCAATCTACTGGATCGGCGCCTACCTCATCAAGGACGC
GGCACTGCCGGCCACCAAGCTCACCGATTTCTCGAACATGGTCGTCTTCTCCAGCTACGCGATGCAGGTCATCATGGCCT
TCCTGCTCTTAAGCATGGTCTTCGTGCTCTGGCCGCGCGCCGACGTTTCCGCCCAGCGTGTGCTGGAAGTGCTTGATACC
GAGCCGAGCGTGAAGTCCGGAACGCTCACTCAAGGCAAGCCCGGTGAAACCGGAACCGTTGAGTTCAAGAATGTCAGCTT
TGCCTACCCCGACACCCGCGAGGCGATGCTCAAGGATATCAACTTCACCGCCAAGAAGGGCCAGACGGTCGCCTTCATCG
GCGCCACCGGTTCCGGTAAATCCTCGCTGGTTAACCTCGTGCCGCGTTTCTATGACGCGACCGAAGGCGAGGTGCTCGTC
GACGGCGTCAACGTCAAGGACTACGACATCAAGGACTTGCGCGACAAGATCGGTTATGTGCCGCAGCAGTCGGTGATGTT
CAAGGGCACCGTGGCGTCCAACGTGAGCTACGGCGACCGACCCGGAGACGCCGAAACCGTCGAGGTGGCCGATACATCCA
CGGCCAAGGGCCGTAAACGTGAACTGGCGCTGATTGCCGGCGAGGACAAGCGCGATGAACTCACTCCCGAGCAGATGACC
AACGTCCGCGAATCCAGCGAGGTCGCTCAGGCCGACGAGTTCGTTGAACGTATGGACGGCAAGTACGAGGCGCCCATCGC
ACAAAGCGGCTCCAACGTCTCCGGCGGCCAGAAGCAGCGGCTTTCCATCGCCCGCGCCGTCTACCGTCACCCGGAAATCA
TGGTCTTCGATGACTCGTTCAGCGCACTCGATTTCAAAACCGACCGCGCGGTGCGCGACGCCCTCAAGAAAGACGCCGCA
GACTCCACCAAGCTCATCGTCGCCCAGCGCGTGGGCACGATCATGGACGCCGACACCATCGTCGTGCTTGACGACGGCAA
GGTCGTGGGCAAGGGTACACATAAGGAACTGCTCAAGACCTGCAAGGTCTACAAGGAGATCGCCGAGTCTCAGCTGAGCC
CCGACGAGCTGGCCGCGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(357-539)

ABC transporter transmembrane region (ABC_membrane)

(61-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.726

100

0.494