Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OZX72_RS08885 Genome accession   NZ_CP113918
Coordinates   2285309..2287144 (-) Length   611 a.a.
NCBI ID   WP_277158332.1    Uniprot ID   -
Organism   Bifidobacterium sp. ESL0769     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2280309..2292144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX72_RS08875 (OZX72_08875) - 2281166..2281321 (-) 156 WP_277158330.1 hypothetical protein -
  OZX72_RS08880 (OZX72_08880) - 2281322..2284837 (-) 3516 WP_277158331.1 BspA family leucine-rich repeat surface protein -
  OZX72_RS08885 (OZX72_08885) rcrQ 2285309..2287144 (-) 1836 WP_277158332.1 ABC transporter ATP-binding protein Regulator
  OZX72_RS08890 (OZX72_08890) rcrP 2287288..2289147 (-) 1860 WP_277158333.1 ABC transporter ATP-binding protein Regulator
  OZX72_RS08895 (OZX72_08895) - 2289313..2289840 (-) 528 WP_277158334.1 transcriptional regulator -
  OZX72_RS08900 (OZX72_08900) - 2290156..2290359 (-) 204 WP_277142805.1 hypothetical protein -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 67143.89 Da        Isoelectric Point: 7.0843

>NTDB_id=763526 OZX72_RS08885 WP_277158332.1 2285309..2287144(-) (rcrQ) [Bifidobacterium sp. ESL0769]
MPRMRGPVEKPADFGGVMLKLVRYCRKYLPVIIIALVLGAAGTICQIIGPDQLKNMTNAIAKGLPALVHGKLVMGAVDMG
EVTRIGWLLVGLYAGYAILGYAQHWMMATVTQRIAQSLRKSISDKINKLPLKYFDHTSYGDVLSRITNDVDAIGQTLGQS
LGMLITSITLFVGSLIMMFYNNVIMTLCAIAVSVLGVVVMLLIMHFSQKYFARQQIALGDVNGHVEEMYSGHIVVKAYNG
EADSIRRFEKYNNDLYDSAWKSQFLSGLMGPMMNMIGNLSFVAVCIVGGALAINGQIEFGVIVAFMMYVRLFTQPLSQFA
QAFQNLQRCAAASERVFGFLEEPEMSDESKKSALLGRDPKTGKPTRVRGDVEFKDVSFGYEPGKPIIHDFSASVKAGQKV
AIVGPTGAGKSTMVNLLMRFYDIDGGAMYIDGIDTSTVPRANVHDQFSMVLQDTWVFRGTVKENVAYSKKGVTDQQIEDA
CKAVGLDHYVRSLPQGYDTVLDDNSSLSQGQRQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDDLTVGRTSFV
IAHRLSTIKDADMILVMNHGDIVERGTHDELLKKGGFYADLYNSQFSTLVA

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=763526 OZX72_RS08885 WP_277158332.1 2285309..2287144(-) (rcrQ) [Bifidobacterium sp. ESL0769]
ATGCCAAGAATGAGGGGACCGGTCGAGAAGCCGGCCGATTTCGGCGGAGTGATGCTCAAACTCGTGCGTTACTGCCGCAA
ATACCTGCCCGTCATCATCATCGCGCTCGTCTTGGGCGCGGCCGGCACCATCTGCCAGATCATCGGGCCGGATCAACTGA
AGAACATGACCAACGCCATCGCCAAGGGCCTGCCCGCCTTGGTGCACGGCAAGCTCGTGATGGGCGCGGTCGATATGGGC
GAGGTCACGCGCATCGGTTGGCTTTTGGTCGGTCTCTACGCCGGCTATGCCATCTTGGGCTACGCGCAACACTGGATGAT
GGCCACCGTCACCCAGCGCATCGCACAAAGCCTGCGCAAGTCGATCTCCGACAAGATCAACAAGCTGCCGCTCAAGTACT
TCGACCACACCAGCTACGGCGACGTGCTTTCGCGCATCACCAACGATGTCGACGCCATCGGCCAGACCCTGGGCCAGTCG
CTGGGCATGCTCATCACTTCAATCACGTTGTTCGTCGGCTCGCTGATCATGATGTTCTACAACAACGTCATCATGACGCT
TTGTGCGATTGCGGTCTCGGTTTTGGGCGTTGTGGTCATGCTGCTCATCATGCACTTCTCGCAGAAATACTTCGCCCGCC
AGCAAATCGCGCTCGGCGACGTCAACGGTCACGTCGAAGAGATGTACTCCGGCCATATCGTCGTCAAGGCCTATAACGGC
GAGGCCGACTCCATCCGCCGTTTCGAGAAGTACAACAACGACCTCTATGATTCCGCATGGAAGAGCCAGTTCCTCTCCGG
TCTGATGGGCCCGATGATGAACATGATCGGCAACCTGAGTTTCGTCGCGGTCTGCATCGTCGGCGGTGCGCTCGCCATCA
ACGGCCAGATTGAGTTCGGCGTCATCGTGGCCTTCATGATGTACGTCCGCCTCTTCACCCAGCCGCTTTCACAGTTCGCG
CAGGCCTTCCAGAACCTCCAGCGTTGTGCCGCCGCTTCCGAGCGCGTCTTCGGCTTCCTCGAGGAGCCCGAGATGAGCGA
CGAAAGCAAGAAGTCTGCGCTGCTCGGCCGCGACCCGAAGACCGGCAAGCCCACCCGCGTTCGTGGTGACGTCGAATTCA
AGGACGTCAGCTTCGGTTACGAGCCCGGCAAGCCGATTATTCACGACTTCTCGGCTAGTGTCAAAGCCGGCCAGAAGGTC
GCCATCGTCGGCCCGACCGGTGCCGGCAAGTCCACCATGGTCAACCTCTTGATGCGTTTCTATGACATCGACGGCGGCGC
CATGTATATCGACGGGATCGACACCTCCACGGTTCCGCGCGCCAATGTGCACGACCAGTTCTCGATGGTGCTGCAGGATA
CGTGGGTTTTCCGCGGCACGGTCAAGGAGAACGTCGCTTACTCCAAGAAGGGTGTAACCGACCAGCAGATCGAGGATGCA
TGTAAGGCCGTCGGCCTTGACCATTACGTGCGCTCGCTGCCGCAGGGCTACGACACCGTGCTCGATGACAATTCCTCGCT
TTCGCAGGGCCAGCGTCAGTTGCTGACGATTGCCCGCGCGATGGTGCAGGATGCGCCGATTCTGATTCTTGACGAGGCTA
CGTCGTCGGTCGATACTCGTACCGAGGAGCTGATCCAGAAGGCGATGGACGACCTGACCGTGGGCCGCACGAGCTTCGTG
ATCGCGCATCGTCTCTCCACCATCAAGGATGCGGACATGATCCTGGTGATGAACCACGGCGACATCGTCGAACGCGGCAC
CCACGACGAGCTCTTAAAGAAGGGTGGTTTCTACGCCGACCTCTATAACAGCCAGTTCTCCACGCTGGTCGCGTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(388-535)

ABC transporter transmembrane region (ABC_membrane)

(32-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

52.703

96.89

0.511