Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OZX73_RS00925 Genome accession   NZ_CP113917
Coordinates   303847..305682 (+) Length   611 a.a.
NCBI ID   WP_277149779.1    Uniprot ID   -
Organism   Bifidobacterium sp. ESL0775     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 298847..310682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX73_RS00915 (OZX73_00915) - 300854..301381 (+) 528 WP_277149775.1 MarR family winged helix-turn-helix transcriptional regulator -
  OZX73_RS00920 (OZX73_00920) rcrP 301771..303630 (+) 1860 WP_277149777.1 ABC transporter ATP-binding protein Regulator
  OZX73_RS00925 (OZX73_00925) rcrQ 303847..305682 (+) 1836 WP_277149779.1 ABC transporter ATP-binding protein Regulator
  OZX73_RS00930 (OZX73_00930) - 305957..307714 (-) 1758 WP_277149780.1 MFS transporter -
  OZX73_RS00935 (OZX73_00935) - 308004..308675 (-) 672 WP_277149782.1 hypothetical protein -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 67216.88 Da        Isoelectric Point: 7.0843

>NTDB_id=763519 OZX73_RS00925 WP_277149779.1 303847..305682(+) (rcrQ) [Bifidobacterium sp. ESL0775]
MPRMRGPVEKPADFGGVMLKLVRYCRKYLPVIVIALILGAAGTICQIIGPDQLKNMTNAIAKGLPALVHGKPVMGAVDMG
EVTRIAWLLVGLYAGYAILGYAQHWMMATVTQRIGQNLRKSISDKINKLPLKYFDHTSYGDVLSRITNDVDAIGQTLGQS
LGMLITSTTLFIGSLIMMFYNNVIMTLCAIGISVLGVVIMMTIMHFSQKYFARQQIALGDVNGHVEEMYSGHIVVKAYNG
EADSIRRFEKYNNDLYDSAWKSQFLSGLMNPMMNMVGNLSFVAVCIVGGALAINGKIEFGVIVAFMMYVRLFTQPLSQFA
QAFQNLQRCAAASERVFGFLEEPEMSDESRKPALLGRDPKTGKPTRVRGDVEFKDVSFGYEPGKPIIHDFSASVKAGQKV
AIVGPTGAGKSTMVNLLMRFYDIDGGAMYIDGIDTSTVPRSNVHDQFSMVLQDTWVFRGTVKENVAYSKKGVTDQQIEDA
CKAVGLDHYVRSLPQGYDTVLDDNSSLSQGQRQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDDLTVGRTSFV
IAHRLSTIKDADMILVMNHGDIVERGTHDELLAKGGFYADLYNSQFSTLVA

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=763519 OZX73_RS00925 WP_277149779.1 303847..305682(+) (rcrQ) [Bifidobacterium sp. ESL0775]
ATGCCAAGAATGAGGGGACCGGTCGAGAAGCCGGCCGATTTCGGCGGAGTGATGCTCAAACTGGTGCGTTACTGCCGCAA
ATACCTGCCCGTCATCGTCATCGCGCTCATCTTGGGCGCGGCCGGCACCATCTGCCAGATCATCGGGCCGGACCAACTGA
AGAACATGACCAACGCCATCGCCAAAGGCCTGCCCGCCCTGGTGCACGGCAAGCCCGTGATGGGTGCGGTCGATATGGGC
GAGGTCACGCGCATCGCATGGCTGCTGGTCGGCCTCTACGCCGGCTATGCCATCCTCGGCTACGCGCAGCACTGGATGAT
GGCCACCGTCACCCAGCGCATCGGCCAGAACCTGCGCAAGTCGATCTCCGACAAGATCAACAAGCTGCCGCTCAAGTACT
TCGACCACACCAGCTATGGCGATGTGCTTTCACGTATTACAAACGACGTCGACGCCATCGGCCAGACCCTGGGCCAGTCG
CTGGGCATGCTGATCACTTCGACCACGCTGTTCATCGGGTCGCTGATCATGATGTTCTACAACAACGTCATCATGACGCT
GTGCGCGATCGGGATTTCCGTCTTGGGCGTGGTCATCATGATGACCATCATGCACTTCTCGCAGAAGTACTTCGCCCGCC
AGCAGATCGCGCTCGGCGACGTCAACGGCCACGTCGAGGAGATGTACTCCGGCCATATCGTCGTCAAGGCCTACAACGGC
GAGGCCGACTCCATCCGCCGCTTCGAGAAGTACAACAACGACCTCTATGATTCCGCGTGGAAGAGCCAGTTCCTCTCGGG
CCTCATGAACCCGATGATGAACATGGTCGGCAACCTGAGCTTCGTCGCGGTCTGCATCGTCGGTGGCGCGCTCGCCATCA
ACGGCAAGATCGAGTTCGGCGTCATCGTGGCCTTCATGATGTACGTCCGCCTCTTCACCCAGCCGCTTTCCCAGTTCGCA
CAGGCCTTCCAGAACCTGCAGCGTTGCGCTGCAGCGTCCGAGCGTGTCTTCGGCTTCCTTGAGGAGCCCGAGATGAGCGA
CGAGAGCAGGAAGCCCGCGCTGCTCGGCCGCGACCCGAAGACCGGCAAACCCACCCGTGTGCGTGGCGATGTCGAGTTCA
AGGACGTCAGCTTCGGCTACGAGCCCGGCAAACCGATCATCCACGACTTCTCCGCGTCCGTCAAGGCCGGCCAGAAGGTC
GCCATCGTCGGCCCGACCGGTGCAGGCAAGTCCACCATGGTCAATTTGTTGATGCGCTTCTACGACATCGACGGTGGAGC
CATGTACATCGACGGCATCGATACCTCCACGGTTCCGCGCTCCAACGTGCACGACCAGTTCTCGATGGTCTTGCAGGACA
CGTGGGTGTTCCGTGGCACGGTCAAGGAGAATGTCGCGTATTCCAAGAAGGGCGTCACCGATCAGCAGATCGAGGACGCG
TGCAAGGCCGTCGGGCTTGACCATTACGTGCGCTCGCTGCCGCAGGGCTACGACACCGTGCTTGACGACAATTCCTCGCT
TTCGCAAGGTCAGCGCCAGTTGCTGACAATCGCCCGCGCGATGGTGCAGGACGCGCCGATCCTGATCCTGGATGAGGCCA
CCTCGTCGGTCGACACCCGCACCGAGGAGCTGATCCAGAAGGCGATGGACGACCTGACTGTGGGCCGCACGAGCTTCGTG
ATTGCGCACCGCCTCTCGACCATCAAGGACGCTGACATGATTCTGGTGATGAACCACGGCGACATCGTCGAGCGCGGCAC
CCACGACGAGCTGCTTGCGAAGGGCGGCTTCTACGCCGACCTCTACAACAGCCAGTTCTCGACGTTGGTGGCGTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(33-316)

ABC transporter (ABC_tran)

(388-535)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.041

96.89

0.514