Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OZX73_RS00920 Genome accession   NZ_CP113917
Coordinates   301771..303630 (+) Length   619 a.a.
NCBI ID   WP_277149777.1    Uniprot ID   -
Organism   Bifidobacterium sp. ESL0775     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 296771..308630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX73_RS00905 (OZX73_00905) - 298031..298180 (-) 150 WP_277149772.1 hypothetical protein -
  OZX73_RS00910 (OZX73_00910) - 298533..300008 (+) 1476 WP_277150868.1 amino acid permease -
  OZX73_RS00915 (OZX73_00915) - 300854..301381 (+) 528 WP_277149775.1 MarR family winged helix-turn-helix transcriptional regulator -
  OZX73_RS00920 (OZX73_00920) rcrP 301771..303630 (+) 1860 WP_277149777.1 ABC transporter ATP-binding protein Regulator
  OZX73_RS00925 (OZX73_00925) rcrQ 303847..305682 (+) 1836 WP_277149779.1 ABC transporter ATP-binding protein Regulator
  OZX73_RS00930 (OZX73_00930) - 305957..307714 (-) 1758 WP_277149780.1 MFS transporter -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 68009.73 Da        Isoelectric Point: 5.7512

>NTDB_id=763518 OZX73_RS00920 WP_277149777.1 301771..303630(+) (rcrP) [Bifidobacterium sp. ESL0775]
MLRISKYLSKTEIGQMLLSLAFIAGQVFFDLKLPDYMSKVTALVETPGSKMVDIWKEGGKMLLVSLGSVLCAIAVGYLMA
RIGASFSQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDITQIQMFITMGVLLIFRAPIMAVWAICKIAGKGFEWTVA
TAVATVIMLVFVIVIMIMVMPKFRSMQRLTDNINAVARENLTGLRVVRAYNAEDYQENKFAKVNDDLTNTQLFTTRAMAA
MNPVMSSVMNGLGLAIYWIGAYLIKDAALPATKLTDFSNMVVFSSYAMQVIMAFLLLSMVFVLWPRADVSAQRVMEVLDT
EPSVKSGTLKDGKPGETGTVEFRNVGFAYPGTRDEMLKDISFTAKKGQTVAFIGSTGSGKSTLVNLVPRFYDTTEGEVLV
DGVNVKDYDIKDLRDKIGYVPQQSVMFKGTVASNVSYGDRPGDAETVEIADTSTAKGRKRELALIEGEDKRDELTPEQKA
NVRAASEVAQADEFVERMDGEYEAPIAQSGSNVSGGQKQRLSIARAVYRHPEIMIFDDSFSALDFKTDRAVRDALKKDAA
DSTKLIVAQRVGTIMDADTIVVLDDGKVVGEGTHKELLKTCKVYKEIAESQLSPDELAA

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=763518 OZX73_RS00920 WP_277149777.1 301771..303630(+) (rcrP) [Bifidobacterium sp. ESL0775]
ATGCTTCGCATCAGCAAATATCTCTCCAAAACGGAGATCGGGCAGATGCTGCTGAGCCTTGCGTTCATCGCGGGGCAGGT
CTTTTTCGACCTGAAGCTGCCGGACTATATGTCCAAGGTGACGGCGCTGGTCGAGACGCCGGGCAGCAAGATGGTCGACA
TCTGGAAAGAGGGCGGCAAGATGCTGCTCGTTTCTCTGGGCTCGGTGCTCTGCGCCATCGCCGTCGGATACCTCATGGCC
CGTATCGGCGCCTCGTTCAGCCAACGCCTGCGCTCGCTTGAGTTCCGCAAGGTCGAATCCTTCGGGCCTGCCGAGATGAG
CAAGTTCTCCACGGCCTCGCTGATCACCCGCTCCACCAACGACATCACGCAGATCCAGATGTTCATCACCATGGGCGTGC
TGCTGATCTTCCGCGCGCCGATCATGGCAGTCTGGGCAATTTGCAAGATTGCCGGCAAAGGCTTCGAGTGGACGGTCGCC
ACGGCCGTCGCCACGGTGATCATGCTGGTCTTCGTCATCGTCATCATGATCATGGTGATGCCGAAGTTCCGTTCGATGCA
GCGCTTGACCGACAACATCAACGCCGTCGCCCGCGAGAACCTGACCGGTTTGCGCGTCGTGCGCGCCTACAACGCCGAGG
ATTATCAGGAAAACAAGTTCGCCAAGGTCAACGACGATTTGACCAATACCCAGCTCTTCACCACCCGCGCGATGGCCGCG
ATGAACCCGGTCATGTCCAGCGTGATGAACGGCCTCGGCCTGGCGATCTACTGGATCGGCGCCTACCTCATCAAGGACGC
GGCGCTTCCGGCCACCAAACTCACCGACTTCTCGAACATGGTCGTCTTCTCCAGCTACGCGATGCAGGTCATCATGGCGT
TCCTGCTTCTGAGCATGGTCTTCGTGCTTTGGCCGCGTGCCGACGTCTCCGCGCAGCGTGTGATGGAAGTGCTTGATACC
GAGCCGTCCGTCAAGTCCGGAACGTTGAAGGACGGCAAGCCCGGCGAGACCGGCACCGTCGAGTTCCGCAACGTCGGTTT
CGCCTACCCGGGCACCCGCGACGAAATGCTCAAAGACATCAGCTTTACCGCCAAGAAGGGTCAGACCGTCGCTTTCATCG
GTTCCACCGGTTCCGGCAAGTCCACGCTCGTGAACCTTGTGCCGCGTTTCTATGACACCACCGAAGGCGAGGTTTTGGTG
GACGGCGTGAACGTCAAGGACTACGACATCAAGGATCTGCGCGACAAGATCGGTTACGTGCCGCAACAGTCCGTGATGTT
CAAAGGCACCGTGGCGTCCAACGTGAGCTACGGCGACCGGCCCGGCGATGCCGAAACCGTCGAGATCGCCGACACCTCCA
CCGCCAAAGGCCGCAAGCGCGAACTGGCGCTCATCGAAGGCGAAGACAAGCGCGACGAACTGACGCCCGAACAGAAGGCC
AACGTCCGTGCGGCGAGCGAGGTCGCGCAGGCCGACGAATTTGTGGAGCGCATGGACGGCGAGTACGAGGCGCCCATCGC
GCAAAGCGGTTCCAACGTCTCCGGTGGTCAGAAGCAGCGGCTTTCCATCGCCCGCGCCGTTTATCGCCACCCCGAAATCA
TGATCTTCGACGACTCGTTCAGCGCGCTCGATTTCAAAACCGACCGTGCGGTGCGTGACGCCTTGAAGAAGGACGCCGCC
GATTCCACCAAGCTCATCGTCGCCCAGCGCGTCGGCACCATCATGGACGCCGACACCATCGTCGTGCTCGACGACGGCAA
GGTCGTGGGCGAGGGAACACACAAGGAACTGCTCAAGACCTGCAAGGTCTACAAGGAGATCGCCGAGTCCCAGCTGAGTC
CCGACGAGCTGGCCGCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(357-539)

ABC transporter transmembrane region (ABC_membrane)

(61-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

49.522

100

0.502