Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OZY47_RS08150 Genome accession   NZ_CP113915
Coordinates   2140389..2142248 (-) Length   619 a.a.
NCBI ID   WP_277177872.1    Uniprot ID   -
Organism   Bifidobacterium sp. ESL0790     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2135389..2147248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZY47_RS08140 (OZY47_08140) - 2135666..2137606 (-) 1941 WP_277177870.1 isopeptide-forming domain-containing fimbrial protein -
  OZY47_RS08145 (OZY47_08145) rcrQ 2138433..2140268 (-) 1836 WP_277177871.1 ABC transporter ATP-binding protein Regulator
  OZY47_RS08150 (OZY47_08150) rcrP 2140389..2142248 (-) 1860 WP_277177872.1 ABC transporter ATP-binding protein Regulator
  OZY47_RS08155 (OZY47_08155) - 2142774..2143256 (-) 483 Protein_1578 MarR family winged helix-turn-helix transcriptional regulator -
  OZY47_RS08160 (OZY47_08160) - 2143602..2143808 (-) 207 WP_277177873.1 hypothetical protein -
  OZY47_RS08165 (OZY47_08165) - 2144987..2146522 (-) 1536 WP_277177874.1 amino acid permease -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 67866.29 Da        Isoelectric Point: 5.2467

>NTDB_id=763500 OZY47_RS08150 WP_277177872.1 2140389..2142248(-) (rcrP) [Bifidobacterium sp. ESL0790]
MLRISKYLSKSEIGQLILSLAFIAGQVFFDLKLPDYMSKVTALVETPGSHMGDIFKEGGKMLLVSLGSVVCAIIVGYFMA
RVGASFSQRLRSLEFRKVESFGPAEMNKFSTASLITRSTNDITQIQMFITMGVLLIFRAPIMAVWAIFKIAGKGFEWTVA
TAVATVAMLVFVVIIMILVMPKFRSMQRLTDNINAVARENLTGLRVVRAYNAEDYQESKFAKVNADLTNTQLFTTRAMAA
MNPVMSSVMNGLGLAIYWIGAYLIKDAALPADRLTYFSNMVVFSSYAMQVIMAFLLLSMVFVLWPRADVSAQRVMEVLDT
EPGVKSGTLTQGKPGETGTIEFRDVSFAYPGTREAMLKGINFKADKGQTVAFIGSTGSGKSSLVNLVPRFYDATEGEVLV
DGVDVKDYDIKALRDKIGYVPQESVMFKGTVESNISYGDRPGDSEAVEIADTSTAKGRKRELALIAGEDKRDELSPEQKA
DVREASDVAQADEFVERMDGKYEAPISQGGSNVSGGQKQRLSIARAVYRHPEIMVFDDSFSALDFKTDRAVRDALKREAG
DATKLIVAQRVGTIMDADTIVVLDDGKVVGEGTHRQLLESCEVYKEIAESQLSPDELAA

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=763500 OZY47_RS08150 WP_277177872.1 2140389..2142248(-) (rcrP) [Bifidobacterium sp. ESL0790]
ATGCTTCGCATCAGCAAATACCTCTCCAAATCGGAGATCGGGCAGTTGATCCTGAGCCTTGCATTCATCGCGGGCCAGGT
CTTCTTCGACCTGAAACTGCCTGACTACATGTCGAAGGTCACGGCGCTGGTCGAGACGCCGGGCAGCCACATGGGCGACA
TCTTCAAAGAGGGCGGCAAGATGCTGCTCGTCTCGCTCGGCTCGGTGGTCTGCGCCATCATTGTCGGCTACTTCATGGCC
CGCGTCGGCGCCTCCTTCAGCCAGCGCCTGCGCTCGCTCGAGTTCCGCAAGGTCGAGTCCTTCGGGCCCGCGGAGATGAA
CAAGTTCTCCACCGCGAGCCTCATCACCCGCTCCACCAACGACATCACGCAGATCCAGATGTTCATCACCATGGGCGTGC
TGCTGATCTTCCGCGCGCCGATCATGGCAGTGTGGGCCATCTTCAAGATCGCGGGCAAGGGCTTCGAGTGGACCGTGGCG
ACGGCCGTGGCGACCGTGGCGATGTTGGTCTTCGTGGTCATCATCATGATCCTCGTGATGCCGAAGTTCCGCTCGATGCA
GCGCCTGACCGACAACATCAACGCCGTGGCCCGCGAGAACCTGACCGGCCTGCGCGTCGTCCGCGCCTACAACGCCGAGG
ACTACCAGGAGAGCAAGTTCGCCAAGGTCAACGCCGATCTGACCAATACCCAGCTCTTCACCACCCGAGCGATGGCAGCG
ATGAATCCCGTGATGAGCTCCGTGATGAACGGCCTCGGCCTCGCGATCTACTGGATCGGCGCCTACCTCATCAAGGACGC
GGCGCTGCCGGCCGACCGCCTGACCTACTTCTCGAACATGGTCGTCTTCTCTAGCTACGCGATGCAGGTCATCATGGCCT
TCCTGCTCTTGAGCATGGTCTTCGTGCTCTGGCCGCGCGCCGACGTCTCCGCGCAGCGTGTGATGGAAGTGCTCGACACC
GAACCCGGCGTCAAGTCCGGCACGCTCACCCAGGGCAAGCCGGGCGAGACCGGCACCATCGAGTTCCGCGACGTCAGCTT
CGCCTACCCGGGCACCCGCGAGGCGATGCTCAAAGGCATCAACTTCAAGGCGGACAAGGGCCAGACCGTCGCCTTCATCG
GCTCCACCGGCTCCGGCAAATCCTCGCTGGTCAACCTCGTGCCGCGCTTCTACGACGCGACCGAGGGCGAGGTGCTGGTC
GACGGCGTGGACGTGAAGGACTACGACATCAAGGCCTTGCGCGACAAGATCGGCTACGTGCCGCAGGAATCCGTGATGTT
CAAGGGCACCGTGGAGTCCAACATCAGCTATGGCGACCGGCCGGGCGACTCGGAGGCCGTCGAAATCGCCGACACCTCCA
CTGCCAAGGGCCGCAAGCGCGAGTTGGCGCTCATCGCCGGCGAGGACAAGCGCGACGAGTTGAGCCCCGAGCAGAAGGCC
GACGTGCGTGAGGCCAGCGACGTGGCGCAGGCCGACGAGTTCGTGGAGCGCATGGACGGCAAATATGAGGCGCCGATTTC
GCAGGGCGGCTCCAACGTCTCCGGCGGGCAGAAGCAGCGCCTCTCCATCGCGCGCGCCGTTTACCGGCACCCCGAGATCA
TGGTCTTCGACGACTCGTTCAGCGCGCTCGACTTCAAGACGGATCGCGCGGTGCGCGACGCCCTGAAGCGCGAGGCCGGC
GACGCCACCAAGCTCATCGTCGCCCAGCGCGTGGGCACCATCATGGACGCCGACACCATCGTCGTGCTCGACGACGGCAA
GGTCGTCGGCGAGGGCACCCACAGGCAGCTCCTCGAAAGTTGCGAGGTCTATAAGGAGATCGCGGAGTCGCAGCTGAGCC
CGGACGAGCTGGCTGCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(357-539)

ABC transporter transmembrane region (ABC_membrane)

(61-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.248

100

0.489